Factsheet for VIT_07s0104g00270.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0070g00710.t01	Wine grape	mitochondrion	80.37	83.23
KRG95498	Soybean	mitochondrion	54.52	56.45
KRH67172	Soybean	plastid	53.58	55.66
VIT_05s0020g02630.t01	Wine grape	cytosol	57.01	55.45
Bra007728.1-P	Field mustard	plastid	56.07	54.22
CDY63340	Canola	plastid	56.07	54.22
AT3G63110.1	Thale cress	plastid	56.7	54.17
CDY67797	Canola	mitochondrion	55.76	53.92
CDX93935	Canola	plastid	56.07	53.89
Bra040431.1-P	Field mustard	mitochondrion, plastid	55.45	53.29
CDX89173	Canola	mitochondrion, plastid	55.45	53.29
VIT_08s0040g01010.t01	Wine grape	cytosol, nucleus, plastid	42.37	52.71
KRH71448	Soybean	golgi, mitochondrion, plastid	53.27	52.29
Solyc09g064910.1.1	Tomato	mitochondrion	51.09	52.23
KRH31999	Soybean	mitochondrion	54.83	51.16
PGSC0003DMT400002509	Potato	mitochondrion	50.78	51.1
GSMUA_AchrUn_...	Banana	cytosol	45.48	51.05
HORVU5Hr1G110100.1	Barley	mitochondrion	46.73	49.67
Zm00001d034584_P001	Maize	plastid	46.73	45.59
OQU90772	Sorghum	plastid	47.66	45.0
HORVU5Hr1G055220.1	Barley	cytosol, mitochondrion	40.81	44.71
HORVU5Hr1G055240.1	Barley	cytosol, mitochondrion	40.81	44.71
TraesCS5A01G181100.1	Wheat	mitochondrion	40.5	44.52
Zm00001d013021_P001	Maize	plastid	46.42	44.21
Zm00001d040810_P001	Maize	cytosol	48.29	44.03
Os03t0810100-01	Rice	extracellular	48.91	43.98
TraesCS5A01G460000.1	Wheat	plastid	47.98	43.87
Os07t0211700-00	Rice	plastid	47.35	43.8
TraesCS3B01G154100.1	Wheat	cytosol, mitochondrion, plastid	46.73	43.35
TraesCS5B01G469600.1	Wheat	cytosol	47.35	43.3
TraesCS5D01G471100.1	Wheat	cytosol	47.35	43.3
TraesCS3D01G137000.1	Wheat	cytosol, plastid	47.04	43.14
VIT_01s0011g03640.t01	Wine grape	plastid	44.24	43.03
Zm00001d005239_P001	Maize	plastid	46.42	42.94
TraesCS3A01G136200.1	Wheat	mitochondrion	46.11	42.77
HORVU3Hr1G025950.1	Barley	cytosol	46.11	42.77
Zm00001d019171_P001	Maize	plastid	47.98	42.31
Os05t0311801-00	Rice	cytosol	44.86	42.23
EES02950	Sorghum	cytosol	48.29	42.12
EER96067	Sorghum	plastid	47.04	41.71
Os03t0356900-01	Rice	extracellular	41.74	41.23
TraesCS5B01G178800.1	Wheat	mitochondrion, plastid	41.12	41.12
GSMUA_AchrUn_...	Banana	mitochondrion	43.93	40.4
Zm00001d003869_P001	Maize	cytosol	39.88	39.75
TraesCS5D01G185500.1	Wheat	plastid	39.56	39.56
TraesCS1B01G074400.1	Wheat	cytosol, mitochondrion, plastid	39.88	39.26
EES12063	Sorghum	cytosol	41.12	38.82
Os03t0358900-00	Rice	cytosol	39.25	38.41
TraesCS1B01G323900.1	Wheat	plastid	29.91	34.29
TraesCS1A01G057000.1	Wheat	cytosol	41.43	34.1
HORVU1Hr1G011480.1	Barley	cytosol, mitochondrion, plastid	40.81	33.42
VIT_06s0061g01410.t01	Wine grape	nucleus	38.63	26.16
VIT_19s0014g01630.t01	Wine grape	mitochondrion	24.61	19.95

Protein Annotations

KEGG:00908+2.5.1.75	Gene3D:1.10.287.890	EntrezGene:100245931	wikigene:100245931	MapMan:11.4.1.1	Gene3D:3.40.50.300
ProteinID:ACX55059	ProteinID:ACX55059.1	EMBL:AM483252	ProteinID:CAN64248	ProteinID:CAN64248.1	ProteinID:CCB56827
ProteinID:CCB56827.1	UniProt:F6HQ70	EMBL:FN596005	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006400
GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0052381
EMBL:GQ981408	InterPro:IPT	EntrezGene:LOC100245931	wikigene:LOC100245931	HAMAP:MF_00185	InterPro:P-loop_NTPase
PFAM:PF01715	PANTHER:PTHR11088	PANTHER:PTHR11088:SF49	SUPFAM:SSF52540	TIGR:TC59486	UniParc:UPI0002108022
ArrayExpress:VIT_07s0104g00270	EnsemblPlantsGene:VIT_07s0104g00270	EnsemblPlants:VIT_07s0104g00270.t01	unigene:Vvi.26308	RefSeq:XP_002271962	RefSeq:XP_002271962.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:1521786..1523000

Molecular Weight (calculated)

36076.6 Da

IEP (calculated)

9.160

GRAVY (calculated)

-0.264

Length

321 amino acids

Sequence
(BLAST)

001: MRKQTQPLLS IPPGDLTMDV SGHRWPKGKV VVVMGATGTG KSRLSIDLAT RFPAEIVNSD KMQVYEGLDI VTNKITEEEQ RGVPHHLLRI AHPNVDFTAS
101: DFRDMASLSI ESILGRGRLP IVVGGSNSYI EALVGDEYSK FRSRYECCFL WVDVSRSVLH SFVSKRVDKM VEKGMVEEVQ QLFHPNADYT RGIRRAIGVP
201: ELDLYFRTEG FLDEEARARV LQEAVHEIKA NTCKLACRQL EKIHRLKNVR KWKIHRLGAT EVLRKCDREA DEAWEKLVAR PSTMMVAQFL YSVGATRSIA
301: TTSPPTIRAA ASMEAALAAT H

Best Arabidopsis Sequence Match ( AT3G63110.1 )
(BLAST)

001: MIMKISMAMC KQPLPPSPTL DFPPARFGPN MLTLNPYGPK DKVVVIMGAT GTGKSRLSVD IATRFRAEII NSDKIQVHQG LDIVTNKITS EESCGVPHHL
101: LGVLPPEADL TAANYCHMAN LSIESVLNRG KLPIIVGGSN SYVEALVDDK ENKFRSRYDC CFLWVDVALP VLHGFVSERV DKMVESGMVE EVREFFDFSN
201: SDYSRGIKKA IGFPEFDRFF RNEQFLNVED REELLSKVLE EIKRNTFELA CRQREKIERL RKVKKWSIQR VDATPVFTKR RSKMDANVAW ERLVAGPSTD
301: TVSRFLLDIA SRRPLVEAST AVAAAMEREL SRCLVA

Arabidopsis Description

IPT3IPT3 [Source:UniProtKB/TrEMBL;Acc:A0A178V8J2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.