Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036662.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 54.55 | 86.07 |
| AT1G62262.1 | Thale cress | plasma membrane | 79.48 | 83.84 |
| CDY39794 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 83.12 | 82.69 |
| Bra027058.1-P | Field mustard | plasma membrane | 81.3 | 82.15 |
| CDY12936 | Canola | plasma membrane | 81.04 | 81.89 |
| CDY08628 | Canola | golgi, peroxisome, plasma membrane | 81.3 | 80.88 |
| CDY03280 | Canola | plasma membrane | 81.3 | 79.85 |
| Bra034474.1-P | Field mustard | peroxisome | 44.16 | 77.98 |
| Bra034473.1-P | Field mustard | extracellular, golgi, plasma membrane | 37.14 | 77.3 |
| CDY24881 | Canola | extracellular | 36.1 | 72.4 |
| GSMUA_Achr6P07610_001 | Banana | golgi, mitochondrion, plasma membrane, plastid | 52.73 | 60.06 |
| Solyc03g031590.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 54.81 | 56.57 |
| Solyc07g051950.2.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane | 52.21 | 56.3 |
| KRH51762 | Soybean | mitochondrion | 45.19 | 55.41 |
| KRH56158 | Soybean | golgi, peroxisome, plasma membrane | 52.73 | 54.86 |
| GSMUA_Achr1P25300_001 | Banana | cytosol, endoplasmic reticulum, plasma membrane | 53.51 | 54.07 |
| KRH25357 | Soybean | plasma membrane | 41.56 | 53.51 |
| KRH51125 | Soybean | plasma membrane | 51.69 | 53.07 |
| VIT_18s0001g13440.t01 | Wine grape | golgi, plasma membrane, vacuole | 43.12 | 53.04 |
| VIT_12s0059g00860.t01 | Wine grape | peroxisome, plasma membrane, plastid | 52.99 | 52.85 |
| KRH02037 | Soybean | plasma membrane | 50.91 | 52.55 |
| KRH61084 | Soybean | golgi, peroxisome, plasma membrane | 52.73 | 52.45 |
| GSMUA_Achr9P21990_001 | Banana | plasma membrane | 51.43 | 52.38 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 48.83 | 52.08 |
| GSMUA_Achr7P17640_001 | Banana | golgi, plasma membrane, plastid | 50.39 | 50.52 |
| Solyc04g080990.1.1 | Tomato | cytosol, golgi, peroxisome | 51.95 | 50.25 |
| TraesCS3B01G199200.1 | Wheat | plasma membrane | 49.87 | 49.1 |
| TraesCS3D01G174800.1 | Wheat | plasma membrane | 49.61 | 49.1 |
| HORVU3Hr1G033800.1 | Barley | plastid | 49.61 | 48.35 |
| TraesCS3A01G167000.1 | Wheat | plasma membrane | 49.35 | 47.15 |
| Zm00001d039241_P001 | Maize | golgi, plasma membrane, plastid | 47.27 | 46.79 |
| Os05t0269200-00 | Rice | cytosol, golgi, plasma membrane | 46.75 | 45.11 |
| EER99979 | Sorghum | plastid | 47.53 | 43.57 |
| Os01t0247700-01 | Rice | extracellular, plasma membrane | 39.22 | 43.52 |
| HORVU5Hr1G066120.1 | Barley | extracellular, plasma membrane | 27.01 | 38.1 |
| HORVU2Hr1G118150.1 | Barley | peroxisome | 27.27 | 35.12 |
| HORVU3Hr1G098700.1 | Barley | extracellular, plasma membrane | 28.57 | 33.33 |
| AT4G27970.6 | Thale cress | plastid | 31.95 | 23.7 |
| AT1G12480.1 | Thale cress | cytosol, nucleus, plasma membrane | 33.51 | 23.2 |
| AT5G24030.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 30.65 | 18.58 |
Protein Annotations
| Gene3D:1.50.10.150 | MapMan:24.3.10 | EntrezGene:842525 | UniProt:A0A178W8P4 | ProteinID:AAB60772.1 | ProteinID:AEE33945.1 |
| ArrayExpress:AT1G62280 | EnsemblPlantsGene:AT1G62280 | RefSeq:AT1G62280 | TAIR:AT1G62280 | RefSeq:AT1G62280-TAIR-G | EnsemblPlants:AT1G62280.1 |
| TAIR:AT1G62280.1 | Unigene:At.36280 | EMBL:BT004052 | EMBL:BT021090 | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0006821 |
| GO:GO:0006873 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008308 | GO:GO:0009414 | GO:GO:0009628 |
| GO:GO:0009651 | GO:GO:0009987 | GO:GO:0015698 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019725 |
| GO:GO:0055085 | GO:GO:0098656 | GO:GO:1901529 | InterPro:IPR038665 | RefSeq:NP_176418.2 | ProteinID:OAP13763.1 |
| PFAM:PF03595 | PO:PO:0001185 | PO:PO:0003011 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009031 | PO:PO:0025281 | PANTHER:PTHR31269 | PANTHER:PTHR31269:SF7 | UniProt:Q5E930 | InterPro:SLAC/SLAH |
| Symbol:SLAH1 | TMHMM:TMhelix | UniParc:UPI000034F4D4 | InterPro:Voltage-dep_anion_channel | InterPro:Voltage-dep_anion_channel_sf | SEG:seg |
Description
SLAH1SLAH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8P4]
Coordinates
chr1:-:23007044..23008610
Molecular Weight (calculated)
43409.9 Da
IEP (calculated)
9.132
GRAVY (calculated)
0.485
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIPRQEIHI EIDNSIPSSK EFKTGLADAK PVVLMSALRS LHAGYFRISL SLCSQALLWK IMIAPESPSM SHMHSKLPSM AFHLLWYLAL VTQVSLCFLY
101: ALKCIFFFDK VKEEFLHYIG VNYLYAPSIS WLLMLQSAPM MEPNSVLYQT LFWIFAVPVL TLDIKLYGQW FTTEKRFLSM LANPASQVSV IANLVAARGA
201: AEMGWNECAL CMFSLGMVHY LVIFVTLYQR LPGGNNFPAK LRPIFFLFVA APAMASLAWN SICGTFDAVA KMLFFLSLFI FMSLVCRPNL FKKSMKRFNV
301: AWWAYSFPLT FLALDSVQYA QEVKDPVGSG LMLIFSSISV LIFLGMMVLT AANSNRLLRH DPVLGSATDP KDKQKTLSLN ATNQN
101: ALKCIFFFDK VKEEFLHYIG VNYLYAPSIS WLLMLQSAPM MEPNSVLYQT LFWIFAVPVL TLDIKLYGQW FTTEKRFLSM LANPASQVSV IANLVAARGA
201: AEMGWNECAL CMFSLGMVHY LVIFVTLYQR LPGGNNFPAK LRPIFFLFVA APAMASLAWN SICGTFDAVA KMLFFLSLFI FMSLVCRPNL FKKSMKRFNV
301: AWWAYSFPLT FLALDSVQYA QEVKDPVGSG LMLIFSSISV LIFLGMMVLT AANSNRLLRH DPVLGSATDP KDKQKTLSLN ATNQN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.