Factsheet for VIT_12s0059g00860.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plasma membrane, plastid
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P07610_001	Banana	golgi, mitochondrion, plasma membrane, plastid	60.62	69.23
KRH25357	Soybean	plasma membrane	50.26	64.88
KRH56158	Soybean	golgi, peroxisome, plasma membrane	61.92	64.59
VIT_18s0001g13440.t01	Wine grape	golgi, plasma membrane, vacuole	51.81	63.9
GSMUA_Achr10P...	Banana	endoplasmic reticulum	59.07	63.16
GSMUA_Achr7P17640_001	Banana	golgi, plasma membrane, plastid	62.44	62.76
CDY00627	Canola	endoplasmic reticulum, extracellular, plasma membrane	30.31	60.62
GSMUA_Achr1P25300_001	Banana	cytosol, endoplasmic reticulum, plasma membrane	59.33	60.1
GSMUA_Achr9P21990_001	Banana	plasma membrane	58.55	59.79
CDY19522	Canola	endoplasmic reticulum	29.27	56.78
Zm00001d039241_P001	Maize	golgi, plasma membrane, plastid	56.22	55.78
TraesCS3B01G199200.1	Wheat	plasma membrane	56.48	55.75
CDY12933	Canola	endoplasmic reticulum, extracellular, plasma membrane	29.27	55.66
Bra036662.1-P	Field mustard	endoplasmic reticulum, plasma membrane	34.97	55.33
TraesCS3D01G174800.1	Wheat	plasma membrane	55.7	55.27
CDY00628	Canola	endoplasmic reticulum, extracellular, plasma membrane	11.66	54.88
HORVU3Hr1G033800.1	Barley	plastid	55.96	54.68
AT1G62262.1	Thale cress	plasma membrane	51.04	53.97
TraesCS3A01G167000.1	Wheat	plasma membrane	55.96	53.6
AT1G62280.1	Thale cress	plasma membrane	52.85	52.99
CDY12936	Canola	plasma membrane	52.07	52.76
Bra027058.1-P	Field mustard	plasma membrane	52.07	52.76
CDY08628	Canola	golgi, peroxisome, plasma membrane	52.59	52.45
EER99979	Sorghum	plastid	56.74	52.14
CDY39794	Canola	endoplasmic reticulum, nucleus, plasma membrane	51.55	51.42
CDY03280	Canola	plasma membrane	51.3	50.51
Bra034473.1-P	Field mustard	extracellular, golgi, plasma membrane	24.09	50.27
Os01t0247700-01	Rice	extracellular, plasma membrane	44.56	49.57
Os05t0269200-00	Rice	cytosol, golgi, plasma membrane	50.52	48.87
Bra034474.1-P	Field mustard	peroxisome	27.46	48.62
CDY24881	Canola	extracellular	23.58	47.4
HORVU5Hr1G066120.1	Barley	extracellular, plasma membrane	30.05	42.49
CDY19523	Canola	cytosol, extracellular, plasma membrane	12.69	38.58
HORVU2Hr1G118150.1	Barley	peroxisome	29.27	37.79
CDY12934	Canola	cytosol, extracellular, plasma membrane	13.21	37.23
HORVU3Hr1G098700.1	Barley	extracellular, plasma membrane	31.35	36.67
CDY08625	Canola	plasma membrane	18.39	35.32
VIT_02s0025g04930.t01	Wine grape	cytosol, nucleus, plasma membrane, plastid	41.19	30.34
VIT_16s0050g01860.t01	Wine grape	cytosol, nucleus, plasma membrane	36.27	22.33
CDX97407	Canola	cytosol	0.26	0.68

Protein Annotations

Gene3D:1.50.10.150	EntrezGene:100253353	wikigene:100253353	MapMan:24.3.10	EMBL:AM446201	ProteinID:CAN65216
ProteinID:CAN65216.1	ProteinID:CCB51972	ProteinID:CCB51972.1	UniProt:F6HIC6	EMBL:FN595765	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:IPR038665
EntrezGene:LOC100253353	wikigene:LOC100253353	PFAM:PF03595	PANTHER:PTHR31269	PANTHER:PTHR31269:SF4	TMHMM:TMhelix
UniParc:UPI00015CAAE5	ArrayExpress:VIT_12s0059g00860	EnsemblPlantsGene:VIT_12s0059g00860	EnsemblPlants:VIT_12s0059g00860.t01	InterPro:Voltage-dep_anion_channel	InterPro:Voltage-dep_anion_channel_sf
RefSeq:XP_002269615	RefSeq:XP_002269615.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:+:5668615..5670120

Molecular Weight (calculated)

42680.7 Da

IEP (calculated)

8.442

GRAVY (calculated)

0.690

Length

386 amino acids

Sequence
(BLAST)

001: MANNKGLSSP SQPQIELVVD VSIVATPSDQ QGLQGIVERL ISPILTRFHA GYFRISLSLC SQALLWKTLG EPSDDAHAIR HILHTLPSTA FVLLWSLALF
101: ILASLSLIYI LRCLFHFELV KAEFLNDVGV NYLFAPWISW LLLLQSSPFI APRTVYYTVL WGVFIVPIVV LDVKIYGQWF TKGKRFLATV ANPASQLSVI
201: GNLVGAWAAS QMGWKESAVF LFSLGMTHYL VLFVTLYQRL SGSSSLPVIL RPVLFLFFAA PSMASLAWDS IIGTFDNSSK MLFFLSLFLF MSLVSRPGLF
301: KKSIRKFDVA WWAYSFPLTV LALAATEYAQ EVNGGVAHAL MLVLSILSVL VSLLLMVFTA LNTNMLVTGK DDPALNDPND GCTTLP

Best Arabidopsis Sequence Match ( AT1G62280.1 )
(BLAST)

001: MEIPRQEIHI EIDNSIPSSK EFKTGLADAK PVVLMSALRS LHAGYFRISL SLCSQALLWK IMIAPESPSM SHMHSKLPSM AFHLLWYLAL VTQVSLCFLY
101: ALKCIFFFDK VKEEFLHYIG VNYLYAPSIS WLLMLQSAPM MEPNSVLYQT LFWIFAVPVL TLDIKLYGQW FTTEKRFLSM LANPASQVSV IANLVAARGA
201: AEMGWNECAL CMFSLGMVHY LVIFVTLYQR LPGGNNFPAK LRPIFFLFVA APAMASLAWN SICGTFDAVA KMLFFLSLFI FMSLVCRPNL FKKSMKRFNV
301: AWWAYSFPLT FLALDSVQYA QEVKDPVGSG LMLIFSSISV LIFLGMMVLT AANSNRLLRH DPVLGSATDP KDKQKTLSLN ATNQN

Arabidopsis Description

SLAH1SLAH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8P4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.