CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00628	Canola	endoplasmic reticulum, extracellular, plasma membrane	38.31	93.9
CDY19523	Canola	cytosol, extracellular, plasma membrane	35.32	55.91
CDY12934	Canola	cytosol, extracellular, plasma membrane	36.32	53.28
AT1G62262.1	Thale cress	plasma membrane	61.69	33.97
CDY12936	Canola	plasma membrane	54.73	28.87
CDY39794	Canola	endoplasmic reticulum, nucleus, plasma membrane	55.22	28.68
CDY03280	Canola	plasma membrane	54.23	27.81
CDY08628	Canola	golgi, peroxisome, plasma membrane	51.74	26.87
KRH25357	Soybean	plasma membrane	34.83	23.41
VIT_18s0001g13440.t01	Wine grape	golgi, plasma membrane, vacuole	33.83	21.73
KRH51762	Soybean	mitochondrion	30.85	19.75
GSMUA_Achr9P21990_001	Banana	plasma membrane	36.32	19.31
GSMUA_Achr6P07610_001	Banana	golgi, mitochondrion, plasma membrane, plastid	32.34	19.23
Solyc07g051950.2.1	Tomato	cytosol, endoplasmic reticulum, plasma membrane	33.83	19.05
Solyc03g031590.2.1	Tomato	cytosol, peroxisome, plasma membrane	34.83	18.77
GSMUA_Achr1P25300_001	Banana	cytosol, endoplasmic reticulum, plasma membrane	35.32	18.64
VIT_12s0059g00860.t01	Wine grape	peroxisome, plasma membrane, plastid	35.32	18.39
KRH61084	Soybean	golgi, peroxisome, plasma membrane	35.32	18.35
KRH56158	Soybean	golgi, peroxisome, plasma membrane	33.33	18.11
Os01t0247700-01	Rice	extracellular, plasma membrane	30.85	17.87
KRH51125	Soybean	plasma membrane	32.34	17.33
HORVU5Hr1G066120.1	Barley	extracellular, plasma membrane	23.38	17.22
GSMUA_Achr7P17640_001	Banana	golgi, plasma membrane, plastid	32.84	17.19
KRH02037	Soybean	plasma membrane	31.34	16.89
Solyc04g080990.1.1	Tomato	cytosol, golgi, peroxisome	32.84	16.58
Zm00001d039241_P001	Maize	golgi, plasma membrane, plastid	31.84	16.45
Os05t0269200-00	Rice	cytosol, golgi, plasma membrane	31.84	16.04
TraesCS3D01G174800.1	Wheat	plasma membrane	29.85	15.42
TraesCS3B01G199200.1	Wheat	plasma membrane	29.85	15.35
HORVU3Hr1G033800.1	Barley	plastid	29.85	15.19
EER99979	Sorghum	plastid	31.34	15.0
GSMUA_Achr10P...	Banana	endoplasmic reticulum	26.87	14.96
TraesCS3A01G167000.1	Wheat	plasma membrane	29.85	14.89
HORVU2Hr1G118150.1	Barley	peroxisome	21.39	14.38
HORVU3Hr1G098700.1	Barley	extracellular, plasma membrane	22.89	13.94
CDX84361	Canola	plasma membrane	18.91	9.74
CDX97408	Canola	cytosol, peroxisome, plasma membrane, plastid	22.89	9.16
CDX92855	Canola	plastid	20.9	8.43
CDY29871	Canola	plastid	20.4	8.25
CDX98059	Canola	cytosol, peroxisome, plastid	21.89	7.93
CDY30084	Canola	plasma membrane	22.39	7.68
CDY14262	Canola	plastid	22.39	6.94
CDY19015	Canola	plastid	20.4	6.44
CDX89215	Canola	plastid	20.4	6.44
CDY44267	Canola	cytosol	19.4	6.35
CDY46973	Canola	cytosol	18.91	6.15
CDX87147	Canola	cytosol, nucleus, plasma membrane	18.41	5.94
CDX80404	Canola	cytosol	18.41	5.82
CDX88065	Canola	cytosol	18.41	4.97
CDX97407	Canola	cytosol	0.0	0.0
CDY00627	Canola	endoplasmic reticulum, extracellular, plasma membrane	0.0	0.0
CDY12933	Canola	endoplasmic reticulum, extracellular, plasma membrane	0.0	0.0
CDY19522	Canola	endoplasmic reticulum	0.0	0.0
CDY24881	Canola	extracellular	0.0	0.0

Protein Annotations

Gene3D:1.50.10.150	MapMan:35.1	GO:A0A078F2B9	UniProt:A0A078F2B9	EnsemblPlants:CDY08625	ProteinID:CDY08625
ProteinID:CDY08625.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0006810
GO:GO:0006873	GO:GO:0008150	GO:GO:0008308	GO:GO:0009987	GO:GO:0015698	GO:GO:0016020
GO:GO:0016021	GO:GO:0019725	GO:GO:0055085	GO:GO:0098656	EnsemblPlantsGene:GSBRNA2T00000428001	InterPro:IPR038665
PFAM:PF03595	PANTHER:PTHR31269	PANTHER:PTHR31269:SF7	InterPro:SLAC/SLAH	TMHMM:TMhelix	UniParc:UPI0004EE611E
InterPro:Voltage-dep_anion_channel	InterPro:Voltage-dep_anion_channel_sf	SEG:seg	:	:	:

Description

BnaC04g19340DBnaC04g19340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F2B9]

Coordinates

chrLK031987:-:67929..68854

Molecular Weight (calculated)

23376.8 Da

IEP (calculated)

7.096

GRAVY (calculated)

0.316

Length

201 amino acids

Sequence
(BLAST)

001: MESLGVPCQE IQIKIEYAIL RRKKRYANLV DAEPIALMSI LSSFHAGYFR ISLSLCSQAL LWKIMVHLHN HLPSMAFYLM WYIALAIQVS LCFLYAFKCI
101: FYFDLVKEEF SHYIGVNYLY APFISCLLLL QSAPLMEPHS VLYKTLFWVF VLPVLTLDTD ASTVAREEEV QEEEEAIIEP NQRTSNRRKI PNRNVIRVMA
201: S

Best Arabidopsis Sequence Match ( AT1G62262.1 )
(BLAST)

001: MEIPSQEIHI MIDNTISRRK ERKTNLADAE PIVLMSVLSS LHAGYFRISL SLCSQALLWK IMVHLHSELP SMAYYLLWYL ALATQVSLCF LYAFKCIFLF
101: DMVKEEFSHY IGVNYLYAPS ISCLLLLQSA PMIEPHSVLY QTLFWIFAVP VLTLDTKLYG QWFTTEKRFL SIMANPASQV SVIANLVAAR GAAEMGWKEC
201: ALCLFSLGMV HYLVIFVTLY QRLPGGNNFP TTLRPVFFLF FAAPATASLA WNSICGNFDT IAKMLFFLSL FIFISLVCRP NLLKKSIKRF NVAWWAYSFP
301: ITFLALNSVQ YAQEVKDHVA SVLMFIFSSM SVLIFISVML LTAANSKRLL RRDHVLWSST GPKDK

Arabidopsis Description

SLAH4S-type anion channel SLAH4 [Source:UniProtKB/Swiss-Prot;Acc:A8MRV9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.