CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plasma membrane
Any Predictor:	golgi, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39794	Canola	endoplasmic reticulum, nucleus, plasma membrane	89.41	89.41
CDY12936	Canola	plasma membrane	85.79	87.14
CDY03280	Canola	plasma membrane	86.82	85.71
CDY00627	Canola	endoplasmic reticulum, extracellular, plasma membrane	42.38	84.97
AT1G62280.1	Thale cress	plasma membrane	80.88	81.3
CDY19522	Canola	endoplasmic reticulum	41.6	80.9
CDY12933	Canola	endoplasmic reticulum, extracellular, plasma membrane	41.86	79.8
CDY24881	Canola	extracellular	38.24	77.08
CDY00628	Canola	endoplasmic reticulum, extracellular, plasma membrane	14.73	69.51
GSMUA_Achr6P07610_001	Banana	golgi, mitochondrion, plasma membrane, plastid	50.39	57.69
KRH51762	Soybean	mitochondrion	45.74	56.37
Solyc07g051950.2.1	Tomato	cytosol, endoplasmic reticulum, plasma membrane	50.9	55.18
CDY19523	Canola	cytosol, extracellular, plasma membrane	18.09	55.12
KRH56158	Soybean	golgi, peroxisome, plasma membrane	51.94	54.32
KRH25357	Soybean	plasma membrane	41.09	53.18
Solyc03g031590.2.1	Tomato	cytosol, peroxisome, plasma membrane	51.16	53.08
KRH51125	Soybean	plasma membrane	51.16	52.8
VIT_12s0059g00860.t01	Wine grape	peroxisome, plasma membrane, plastid	52.45	52.59
CDY12934	Canola	cytosol, extracellular, plasma membrane	18.6	52.55
KRH02037	Soybean	plasma membrane	50.65	52.55
KRH61084	Soybean	golgi, peroxisome, plasma membrane	52.2	52.2
GSMUA_Achr10P...	Banana	endoplasmic reticulum	48.58	52.08
VIT_18s0001g13440.t01	Wine grape	golgi, plasma membrane, vacuole	42.12	52.08
CDY08625	Canola	plasma membrane	26.87	51.74
GSMUA_Achr1P25300_001	Banana	cytosol, endoplasmic reticulum, plasma membrane	50.39	51.18
GSMUA_Achr9P21990_001	Banana	plasma membrane	48.58	49.74
Solyc04g080990.1.1	Tomato	cytosol, golgi, peroxisome	50.9	49.5
GSMUA_Achr7P17640_001	Banana	golgi, plasma membrane, plastid	49.1	49.48
TraesCS3B01G199200.1	Wheat	plasma membrane	48.06	47.57
TraesCS3D01G174800.1	Wheat	plasma membrane	47.8	47.56
Zm00001d039241_P001	Maize	golgi, plasma membrane, plastid	47.29	47.04
HORVU3Hr1G033800.1	Barley	plastid	47.8	46.84
TraesCS3A01G167000.1	Wheat	plasma membrane	47.55	45.66
Os05t0269200-00	Rice	cytosol, golgi, plasma membrane	45.74	44.36
EER99979	Sorghum	plastid	47.29	43.57
Os01t0247700-01	Rice	extracellular, plasma membrane	39.02	43.52
HORVU5Hr1G066120.1	Barley	extracellular, plasma membrane	27.13	38.46
HORVU2Hr1G118150.1	Barley	peroxisome	27.13	35.12
HORVU3Hr1G098700.1	Barley	extracellular, plasma membrane	27.91	32.73
CDX84361	Canola	plasma membrane	30.23	30.0
CDX92855	Canola	plastid	31.78	24.7
CDY29871	Canola	plastid	31.52	24.55
CDX97408	Canola	cytosol, peroxisome, plasma membrane, plastid	31.78	24.5
CDX98059	Canola	cytosol, peroxisome, plastid	31.78	22.16
CDY30084	Canola	plasma membrane	32.3	21.33
CDX89215	Canola	plastid	31.27	19.0
CDY19015	Canola	plastid	31.27	19.0
CDY14262	Canola	plastid	31.01	18.52
CDX87147	Canola	cytosol, nucleus, plasma membrane	29.46	18.3
CDX80404	Canola	cytosol	29.46	17.92
CDY44267	Canola	cytosol	27.65	17.43
CDY46973	Canola	cytosol	27.65	17.31
CDX88065	Canola	cytosol	29.46	15.3
CDX97407	Canola	cytosol	0.26	0.68

Protein Annotations

Gene3D:1.50.10.150	MapMan:24.3.10	GO:A0A078FA00	UniProt:A0A078FA00	EnsemblPlants:CDY08628	ProteinID:CDY08628
ProteinID:CDY08628.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0006810
GO:GO:0006873	GO:GO:0008150	GO:GO:0008308	GO:GO:0009987	GO:GO:0015698	GO:GO:0016020
GO:GO:0016021	GO:GO:0019725	GO:GO:0055085	GO:GO:0098656	EnsemblPlantsGene:GSBRNA2T00000439001	InterPro:IPR038665
PFAM:PF03595	PANTHER:PTHR31269	PANTHER:PTHR31269:SF7	InterPro:SLAC/SLAH	TMHMM:TMhelix	UniParc:UPI0004EEEF64
InterPro:Voltage-dep_anion_channel	InterPro:Voltage-dep_anion_channel_sf	SEG:seg	:	:	:

Description

BnaC04g19370DBnaC04g19370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FA00]

Coordinates

chrLK031987:-:189859..191116

Molecular Weight (calculated)

43757.2 Da

IEP (calculated)

9.542

GRAVY (calculated)

0.425

Length

387 amino acids

Sequence
(BLAST)

001: MENLEIPKQE VHINIDDSIS CSKERSTDLP HTKPNVLMSI VSRLHAGYFR ISLSLCSQAL LWKMMIAPDS PSMSHLQSNL PSIAFHLLWY LALATQVALC
101: LLYALKCFFF FDMVKEEFSH YIGVNYLYAP SISWLILLQS APMMEPQSVL YQSLFSVFAL PVLALDTKLY GQWFTTEKRF LSMMANPGSQ VSVIANLVAA
201: RGAAEMGWKE CALFLFSLGM VHYLVIFVTL YQRQPGGKNF PTKLRPVFFL FFAAPAMGSL AWNSICGTFD PLAKMLFFLS LFIFMSLVCR PNLFKKSMQR
301: FNVAWWAYSF PITFLALDSV QYAQNVKDRV ASGMMLIFSS ISVLIFLGVM VLIAANSNRL RRRDPVLGSA TSLKDKQKPY RLSAATC

Best Arabidopsis Sequence Match ( AT1G62280.1 )
(BLAST)

001: MEIPRQEIHI EIDNSIPSSK EFKTGLADAK PVVLMSALRS LHAGYFRISL SLCSQALLWK IMIAPESPSM SHMHSKLPSM AFHLLWYLAL VTQVSLCFLY
101: ALKCIFFFDK VKEEFLHYIG VNYLYAPSIS WLLMLQSAPM MEPNSVLYQT LFWIFAVPVL TLDIKLYGQW FTTEKRFLSM LANPASQVSV IANLVAARGA
201: AEMGWNECAL CMFSLGMVHY LVIFVTLYQR LPGGNNFPAK LRPIFFLFVA APAMASLAWN SICGTFDAVA KMLFFLSLFI FMSLVCRPNL FKKSMKRFNV
301: AWWAYSFPLT FLALDSVQYA QEVKDPVGSG LMLIFSSISV LIFLGMMVLT AANSNRLLRH DPVLGSATDP KDKQKTLSLN ATNQN

Arabidopsis Description

SLAH1SLAH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8P4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.