CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98059	Canola	cytosol, peroxisome, plastid	93.34	98.56
AT1G12480.1	Thale cress	cytosol, nucleus, plasma membrane	84.47	89.03
HORVU2Hr1G094480.1	Barley	endoplasmic reticulum, extracellular	12.12	75.53
VIT_02s0025g04930.t01	Wine grape	cytosol, nucleus, plasma membrane, plastid	66.04	73.86
GSMUA_Achr8P12070_001	Banana	cytosol	54.78	64.33
Solyc08g079770.2.1	Tomato	cytosol, peroxisome, plastid	60.24	63.6
PGSC0003DMT400009999	Potato	cytosol	60.24	63.04
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, nucleus, plastid	61.43	61.75
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plasma membrane	55.46	60.19
GSMUA_Achr5P20180_001	Banana	cytosol	57.17	58.98
TraesCS2A01G398000.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	57.17	58.26
TraesCS2B01G416100.1	Wheat	plastid	57.0	57.59
TraesCS2D01G395700.1	Wheat	plastid	56.83	56.92
OQU82188	Sorghum	plastid	57.51	51.61
CDX84361	Canola	plasma membrane	34.13	51.28
CDY29871	Canola	plastid	39.08	46.08
CDX92855	Canola	plastid	38.91	45.78
CDX97408	Canola	cytosol, peroxisome, plasma membrane, plastid	37.71	44.02
CDY00628	Canola	endoplasmic reticulum, extracellular, plasma membrane	5.29	37.8
CDY00627	Canola	endoplasmic reticulum, extracellular, plasma membrane	12.29	37.31
CDY19522	Canola	endoplasmic reticulum	12.46	36.68
CDX87147	Canola	cytosol, nucleus, plasma membrane	38.57	36.28
CDY12933	Canola	endoplasmic reticulum, extracellular, plasma membrane	12.46	35.96
CDY19015	Canola	plastid	38.4	35.32
CDX89215	Canola	plastid	38.4	35.32
CDX80404	Canola	cytosol	38.05	35.06
CDY14262	Canola	plastid	37.37	33.8
CDY44267	Canola	cytosol	35.15	33.55
CDY46973	Canola	cytosol	34.98	33.17
CDY39794	Canola	endoplasmic reticulum, nucleus, plasma membrane	21.84	33.07
CDY12936	Canola	plasma membrane	21.33	32.81
Zm00001d002603_P001	Maize	nucleus	59.22	32.74
CDY03280	Canola	plasma membrane	21.84	32.65
CDY08628	Canola	golgi, peroxisome, plasma membrane	21.33	32.3
CDY24881	Canola	extracellular	10.07	30.73
CDX88065	Canola	cytosol	38.4	30.2
CDY19523	Canola	cytosol, extracellular, plasma membrane	5.8	26.77
CDY12934	Canola	cytosol, extracellular, plasma membrane	6.14	26.28
CDY08625	Canola	plasma membrane	7.68	22.39
CDX97407	Canola	cytosol	0.34	1.35

Protein Annotations

Gene3D:1.50.10.150	MapMan:24.3.10	GO:A0A078GY89	UniProt:A0A078GY89	EnsemblPlants:CDY30084	ProteinID:CDY30084
ProteinID:CDY30084.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0006810
GO:GO:0006873	GO:GO:0008150	GO:GO:0008308	GO:GO:0009987	GO:GO:0015698	GO:GO:0016020
GO:GO:0016021	GO:GO:0019725	GO:GO:0055085	GO:GO:0098656	EnsemblPlantsGene:GSBRNA2T00044639001	InterPro:IPR038665
PFAM:PF03595	PANTHER:PTHR31269	PANTHER:PTHR31269:SF11	InterPro:SLAC/SLAH	TMHMM:TMhelix	UniParc:UPI0004EE34C5
InterPro:Voltage-dep_anion_channel	InterPro:Voltage-dep_anion_channel_sf	SEG:seg	:	:	:

Description

BnaC05g09360DBnaC05g09360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GY89]

Coordinates

chrLK032248:-:485305..487214

Molecular Weight (calculated)

66182.0 Da

IEP (calculated)

9.581

GRAVY (calculated)

0.030

Length

586 amino acids

Sequence
(BLAST)

001: MTDLSIYINL FAHILEKNIF SSVSSIEFIV SMEQKQSAPR SNFADINEVV PEEGAEQEPQ QQDNNKRFSS NRGPNRGRQR PYRGFSRQVS LETGFSVLNR
101: ESKGRGEKKS LPRSGRSFAG FETRGIVNGG GDGRKGDFSI FRTKSTLSKQ NSLLPSVIRE RDIENSLRGE DGETKDESIN ENVSAGRYFA ALRGPELDEV
201: KDNEDILLPK EEQWPFLLRF PIGCYGICLG LSSQAVLWLA LAKSPATHFL HIPPVINLVI WLLALVALVS VSFTYILKCI FYFEAVKREY FHPVRVNFFF
301: APWVVCMFLA ISVPPVLSRK PLHPAIWCVF MGPYFFLELK IYGQWLSGGR RRLCKVANPS SHLSIVGNFV GAILASKVGW NEVAKFLWAV GFAHYLVVFV
401: TLYQRLPTSE ALPKELHPVY SMFIAAPSAA SIAWNTIYGQ FDGCSRTCFF IALFLYISLV VRINFFTGFK FSVAWWSYTF PMTTASVATI KYAEAVPCFT
501: SRALALTLSF ISSAMVCVLF VSTLLHGFVW QSLFPNDLAI AITNKRLTKE KKPFKRAYDL KRWGKQALSK KISAEKDIEP EDESHH

Best Arabidopsis Sequence Match ( AT1G12480.1 )
(BLAST)

001: MERKQSNAHS TFADINEVED EAEQELQQQE NNNNKRFSGN RGPNRGKQRP FRGFSRQVSL ETGFSVLNRE SRERDDKKSL PRSGRSFGGF ESGGIINGGD
101: GRKTDFSMFR TKSTLSKQKS LLPSIIRERD IENSLRTEDG ETKDDSINEN VSAGRYFAAL RGPELDEVKD NEDILLPKEE QWPFLLRFPI GCFGICLGLS
201: SQAVLWLALA KSPATNFLHI TPLINLVVWL FSLVVLVSVS FTYILKCIFY FEAVKREYFH PVRVNFFFAP WVVCMFLAIS VPPMFSPNRK YLHPAIWCVF
301: MGPYFFLELK IYGQWLSGGK RRLCKVANPS SHLSVVGNFV GAILASKVGW DEVAKFLWAV GFAHYLVVFV TLYQRLPTSE ALPKELHPVY SMFIAAPSAA
401: SIAWNTIYGQ FDGCSRTCFF IALFLYISLV ARINFFTGFK FSVAWWSYTF PMTTASVATI KYAEAVPGYP SRALALTLSF ISTAMVCVLF VSTLLHAFVW
501: QTLFPNDLAI AITKRKLTRE KKPFKRAYDL KRWTKQALAK KISAEKDFEA EEESHH

Arabidopsis Description

SLAC1SLAC1 [Source:UniProtKB/TrEMBL;Acc:A0A178WLC1]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.