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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra027058.1-P Field mustard plasma membrane 99.21 99.21
CDY39794 Canola endoplasmic reticulum, nucleus, plasma membrane 89.76 88.37
CDY08628 Canola golgi, peroxisome, plasma membrane 87.14 85.79
CDY00627 Canola endoplasmic reticulum, extracellular, plasma membrane 43.04 84.97
CDY03280 Canola plasma membrane 87.4 84.95
CDY19522 Canola endoplasmic reticulum 43.31 82.91
CDY12933 Canola endoplasmic reticulum, extracellular, plasma membrane 43.31 81.28
AT1G62280.1 Thale cress plasma membrane 81.89 81.04
CDY00628 Canola endoplasmic reticulum, extracellular, plasma membrane 15.75 73.17
CDY24881 Canola extracellular 36.48 72.4
GSMUA_Achr6P07610_001 Banana golgi, mitochondrion, plasma membrane, plastid 52.23 58.88
KRH51762 Soybean mitochondrion 46.98 57.01
CDY19523 Canola cytosol, extracellular, plasma membrane 18.9 56.69
KRH56158 Soybean golgi, peroxisome, plasma membrane 54.59 56.22
Solyc07g051950.2.1 Tomato cytosol, endoplasmic reticulum, plasma membrane 52.49 56.02
CDY08625 Canola plasma membrane 28.87 54.73
Solyc03g031590.2.1 Tomato cytosol, peroxisome, plasma membrane 53.28 54.42
CDY12934 Canola cytosol, extracellular, plasma membrane 19.42 54.01
KRH25357 Soybean plasma membrane 42.26 53.85
KRH51125 Soybean plasma membrane 52.76 53.6
KRH61084 Soybean golgi, peroxisome, plasma membrane 54.07 53.23
KRH02037 Soybean plasma membrane 51.71 52.81
GSMUA_Achr1P25300_001 Banana cytosol, endoplasmic reticulum, plasma membrane 52.76 52.76
GSMUA_Achr9P21990_001 Banana plasma membrane 51.97 52.38
VIT_18s0001g13440.t01 Wine grape golgi, plasma membrane, vacuole 42.78 52.08
VIT_12s0059g00860.t01 Wine grape peroxisome, plasma membrane, plastid 52.76 52.07
GSMUA_Achr10P... Banana endoplasmic reticulum 48.82 51.52
GSMUA_Achr7P17640_001 Banana golgi, plasma membrane, plastid 51.18 50.78
Solyc04g080990.1.1 Tomato cytosol, golgi, peroxisome 53.02 50.75
TraesCS3B01G199200.1 Wheat plasma membrane 50.13 48.85
TraesCS3D01G174800.1 Wheat plasma membrane 49.87 48.84
Zm00001d039241_P001 Maize golgi, plasma membrane, plastid 49.34 48.33
HORVU3Hr1G033800.1 Barley plastid 49.61 47.85
TraesCS3A01G167000.1 Wheat plasma membrane 49.61 46.9
EER99979 Sorghum plastid 49.61 45.0
Os05t0269200-00 Rice cytosol, golgi, plasma membrane 46.72 44.61
Os01t0247700-01 Rice extracellular, plasma membrane 39.37 43.23
HORVU5Hr1G066120.1 Barley extracellular, plasma membrane 27.56 38.46
HORVU2Hr1G118150.1 Barley peroxisome 27.56 35.12
HORVU3Hr1G098700.1 Barley extracellular, plasma membrane 28.35 32.73
CDX84361 Canola plasma membrane 31.5 30.77
CDX92855 Canola plastid 32.28 24.7
CDY29871 Canola plastid 32.02 24.55
CDX97408 Canola cytosol, peroxisome, plasma membrane, plastid 32.28 24.5
CDX98059 Canola cytosol, peroxisome, plastid 32.28 22.16
CDY30084 Canola plasma membrane 32.81 21.33
CDX89215 Canola plastid 32.55 19.47
CDY19015 Canola plastid 32.55 19.47
CDY14262 Canola plastid 32.55 19.14
CDX87147 Canola cytosol, nucleus, plasma membrane 31.23 19.1
CDX80404 Canola cytosol 30.97 18.55
CDY44267 Canola cytosol 29.4 18.24
CDY46973 Canola cytosol 29.4 18.12
CDX88065 Canola cytosol 30.97 15.84
CDX97407 Canola cytosol 0.79 2.03
Protein Annotations
Gene3D:1.50.10.150MapMan:24.3.10GO:A0A078FIB3UniProt:A0A078FIB3EnsemblPlants:CDY12936ProteinID:CDY12936
ProteinID:CDY12936.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0005623GO:GO:0006810
GO:GO:0006873GO:GO:0008150GO:GO:0008308GO:GO:0009987GO:GO:0015698GO:GO:0016020
GO:GO:0016021GO:GO:0019725GO:GO:0055085GO:GO:0098656EnsemblPlantsGene:GSBRNA2T00070608001InterPro:IPR038665
PFAM:PF03595PANTHER:PTHR31269PANTHER:PTHR31269:SF7InterPro:SLAC/SLAHTMHMM:TMhelixUniParc:UPI0004EE732F
InterPro:Voltage-dep_anion_channelInterPro:Voltage-dep_anion_channel_sfSEG:seg:::
Description
BnaA09g13380DBnaA09g13380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIB3]
Coordinates
chrLK032028:-:526329..527687
Molecular Weight (calculated)
43021.6 Da
IEP (calculated)
9.449
GRAVY (calculated)
0.551
Length
381 amino acids
Sequence
(BLAST)
001: MERLVIPTQE VHIDIDDSTS ISKERNTDLV HAKPIVLMSI LSGLHAGYFR ISLSLCSQAL LWKIMIAPDS MSMSHLHSNL PSMAFHLLWY LALATQLLLC
101: LLYALKCFFF FDMVKEEFSH YIGVNYLYAP SISWLILLQS APMMEPQSIL YQTLFSVFAL PVLTLDTKLY GQWFTTEKRF LSMMANPASQ VSVIANLVAA
201: RGAAEMGWRE CALCLFSLGM VHYLVIFVTL YQRLPGGNNF PTKLRPVFFL FFAAPAMGSL AWNSICGSFD PLAKMLFFLS IFIFMSLVCR PNLFKKSMKR
301: FNVAWWAYSF PITFLALNSV QYALEVKEQV AAGLMLISSS ISVLIFLGLM ILTAANSNRL LRRDPVLGSV TSPKVKSRQR S
Best Arabidopsis Sequence Match ( AT1G62280.1 )
(BLAST)
001: MEIPRQEIHI EIDNSIPSSK EFKTGLADAK PVVLMSALRS LHAGYFRISL SLCSQALLWK IMIAPESPSM SHMHSKLPSM AFHLLWYLAL VTQVSLCFLY
101: ALKCIFFFDK VKEEFLHYIG VNYLYAPSIS WLLMLQSAPM MEPNSVLYQT LFWIFAVPVL TLDIKLYGQW FTTEKRFLSM LANPASQVSV IANLVAARGA
201: AEMGWNECAL CMFSLGMVHY LVIFVTLYQR LPGGNNFPAK LRPIFFLFVA APAMASLAWN SICGTFDAVA KMLFFLSLFI FMSLVCRPNL FKKSMKRFNV
301: AWWAYSFPLT FLALDSVQYA QEVKDPVGSG LMLIFSSISV LIFLGMMVLT AANSNRLLRH DPVLGSATDP KDKQKTLSLN ATNQN
Arabidopsis Description
SLAH1SLAH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8P4]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.