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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:golgi, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY39794 Canola endoplasmic reticulum, nucleus, plasma membrane 94.13 95.35
Bra036662.1-P Field mustard endoplasmic reticulum, plasma membrane 58.93 94.67
CDY12936 Canola plasma membrane 84.95 87.4
CDY08628 Canola golgi, peroxisome, plasma membrane 85.71 86.82
CDY00627 Canola endoplasmic reticulum, extracellular, plasma membrane 41.84 84.97
CDY19522 Canola endoplasmic reticulum 41.33 81.41
AT1G62280.1 Thale cress plasma membrane 79.85 81.3
CDY12933 Canola endoplasmic reticulum, extracellular, plasma membrane 41.58 80.3
CDY24881 Canola extracellular 37.5 76.56
CDY00628 Canola endoplasmic reticulum, extracellular, plasma membrane 15.31 73.17
GSMUA_Achr6P07610_001 Banana golgi, mitochondrion, plasma membrane, plastid 49.74 57.69
CDY19523 Canola cytosol, extracellular, plasma membrane 18.37 56.69
KRH51762 Soybean mitochondrion 44.13 55.1
KRH56158 Soybean golgi, peroxisome, plasma membrane 51.28 54.32
CDY08625 Canola plasma membrane 27.81 54.23
Solyc07g051950.2.1 Tomato cytosol, endoplasmic reticulum, plasma membrane 49.23 54.06
CDY12934 Canola cytosol, extracellular, plasma membrane 18.88 54.01
KRH25357 Soybean plasma membrane 40.82 53.51
Solyc03g031590.2.1 Tomato cytosol, peroxisome, plasma membrane 50.77 53.35
GSMUA_Achr10P... Banana endoplasmic reticulum 47.45 51.52
KRH51125 Soybean plasma membrane 49.23 51.47
VIT_12s0059g00860.t01 Wine grape peroxisome, plasma membrane, plastid 50.51 51.3
KRH02037 Soybean plasma membrane 48.72 51.21
GSMUA_Achr1P25300_001 Banana cytosol, endoplasmic reticulum, plasma membrane 49.74 51.18
VIT_18s0001g13440.t01 Wine grape golgi, plasma membrane, vacuole 40.56 50.8
KRH61084 Soybean golgi, peroxisome, plasma membrane 50.0 50.65
GSMUA_Achr7P17640_001 Banana golgi, plasma membrane, plastid 48.98 50.0
GSMUA_Achr9P21990_001 Banana plasma membrane 47.19 48.94
Solyc04g080990.1.1 Tomato cytosol, golgi, peroxisome 49.23 48.49
TraesCS3B01G199200.1 Wheat plasma membrane 47.7 47.83
TraesCS3D01G174800.1 Wheat plasma membrane 47.19 47.56
HORVU3Hr1G033800.1 Barley plastid 47.7 47.34
Zm00001d039241_P001 Maize golgi, plasma membrane, plastid 46.43 46.79
TraesCS3A01G167000.1 Wheat plasma membrane 47.45 46.15
Os05t0269200-00 Rice cytosol, golgi, plasma membrane 45.41 44.61
Os01t0247700-01 Rice extracellular, plasma membrane 38.52 43.52
EER99979 Sorghum plastid 46.43 43.33
HORVU5Hr1G066120.1 Barley extracellular, plasma membrane 27.04 38.83
HORVU2Hr1G118150.1 Barley peroxisome 27.04 35.45
HORVU3Hr1G098700.1 Barley extracellular, plasma membrane 27.81 33.03
CDX84361 Canola plasma membrane 31.12 31.28
CDX97408 Canola cytosol, peroxisome, plasma membrane, plastid 32.14 25.1
CDX92855 Canola plastid 31.63 24.9
CDY29871 Canola plastid 31.38 24.75
CDX98059 Canola cytosol, peroxisome, plastid 32.14 22.7
CDY30084 Canola plasma membrane 32.65 21.84
CDY14262 Canola plastid 32.14 19.44
CDY19015 Canola plastid 31.38 19.31
CDX89215 Canola plastid 31.38 19.31
CDX87147 Canola cytosol, nucleus, plasma membrane 29.59 18.62
CDX80404 Canola cytosol 29.34 18.08
CDY44267 Canola cytosol 27.55 17.59
CDY46973 Canola cytosol 27.3 17.31
CDX88065 Canola cytosol 29.34 15.44
CDX97407 Canola cytosol 0.77 2.03
Protein Annotations
Gene3D:1.50.10.150MapMan:24.3.10GO:A0A078EMS7EnsemblPlants:CDY03280ProteinID:CDY03280ProteinID:CDY03280.1
GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0005623GO:GO:0006810GO:GO:0006873
GO:GO:0008150GO:GO:0008308GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0019725
GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00115842001InterPro:IPR038665PFAM:PF03595PANTHER:PTHR31269PANTHER:PTHR31269:SF7
InterPro:SLAC/SLAHTMHMM:TMhelixUniParc:UPI0004EDE2F6InterPro:Voltage-dep_anion_channelInterPro:Voltage-dep_anion_channel_sfSEG:seg
Description
BnaC09g10680D
Coordinates
chrLK031942:+:364871..366304
Molecular Weight (calculated)
44209.0 Da
IEP (calculated)
10.023
GRAVY (calculated)
0.466
Length
392 amino acids
Sequence
(BLAST)
001: MKSLEIPRQE VHIKIVDSLS TTKERNTDLP HAKPIVLMSV LSSLHAGYFR ISLSLCSQAL LWKIMIAPHS PSMPHLQSSL PSMAFHLLWY LALTTQLSLC
101: VLYALKCFFF FDLVKEEFSH YIGVNYLYAP SISWLILLQS APMMKPQSVL YQTLFSVFAL PVLALDTKLY GQWFTTEKRF LSMMANPASQ VSVVANLVAA
201: RGAAEIGWME CALCLFSLGM VHYLVIFVTL YQRLPGGKNF PTKLRPVFFL FFAAPAMGSL AWNSICGNFD HLAKMLFFLS LFIFMSLVCR PNLFKKAMKR
301: FNVAWWAYSF PITFLALDAV QYAQDVKDQV ASGMMLIFSS ISVLIFLGVM VLTAANSNRL LRRDPVLGSA ASPKDKQSHR GSARLHVNQR QI
Best Arabidopsis Sequence Match ( AT1G62280.1 )
(BLAST)
001: MEIPRQEIHI EIDNSIPSSK EFKTGLADAK PVVLMSALRS LHAGYFRISL SLCSQALLWK IMIAPESPSM SHMHSKLPSM AFHLLWYLAL VTQVSLCFLY
101: ALKCIFFFDK VKEEFLHYIG VNYLYAPSIS WLLMLQSAPM MEPNSVLYQT LFWIFAVPVL TLDIKLYGQW FTTEKRFLSM LANPASQVSV IANLVAARGA
201: AEMGWNECAL CMFSLGMVHY LVIFVTLYQR LPGGNNFPAK LRPIFFLFVA APAMASLAWN SICGTFDAVA KMLFFLSLFI FMSLVCRPNL FKKSMKRFNV
301: AWWAYSFPLT FLALDSVQYA QEVKDPVGSG LMLIFSSISV LIFLGMMVLT AANSNRLLRH DPVLGSATDP KDKQKTLSLN ATNQN
Arabidopsis Description
SLAH1SLAH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8P4]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.