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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, golgi, cytosol

Predictor Summary:
  • nucleus 1
  • golgi 2
  • plasma membrane 2
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • cytosol 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, golgi, peroxisome
Any Predictor:cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
MultiLoc:golgi
Plant-mPloc:plasma membrane, plastid
PProwler:secretory
WoLF PSORT:cytosol
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH51762 Soybean mitochondrion 50.5 64.01
GSMUA_Achr6P07610_001 Banana golgi, mitochondrion, plasma membrane, plastid 52.51 61.83
VIT_18s0001g13440.t01 Wine grape golgi, plasma membrane, vacuole 47.99 61.02
KRH61084 Soybean golgi, peroxisome, plasma membrane 59.3 60.98
CDY00627 Canola endoplasmic reticulum, extracellular, plasma membrane 29.4 60.62
Solyc07g051950.2.1 Tomato cytosol, endoplasmic reticulum, plasma membrane 53.27 59.38
CDY19522 Canola endoplasmic reticulum 29.15 58.29
Solyc03g031590.2.1 Tomato cytosol, peroxisome, plasma membrane 54.27 57.91
CDY12933 Canola endoplasmic reticulum, extracellular, plasma membrane 29.15 57.14
GSMUA_Achr9P21990_001 Banana plasma membrane 53.77 56.61
Bra036662.1-P Field mustard endoplasmic reticulum, plasma membrane 34.42 56.15
GSMUA_Achr7P17640_001 Banana golgi, plasma membrane, plastid 53.77 55.73
GSMUA_Achr1P25300_001 Banana cytosol, endoplasmic reticulum, plasma membrane 53.02 55.38
GSMUA_Achr10P... Banana endoplasmic reticulum 49.5 54.57
AT1G62262.1 Thale cress plasma membrane 49.25 53.7
Bra027058.1-P Field mustard plasma membrane 51.01 53.28
CDY12936 Canola plasma membrane 50.75 53.02
TraesCS3B01G199200.1 Wheat plasma membrane 51.76 52.69
TraesCS3D01G174800.1 Wheat plasma membrane 51.26 52.44
AT1G62280.1 Thale cress plasma membrane 50.25 51.95
HORVU3Hr1G033800.1 Barley plastid 51.26 51.65
Zm00001d039241_P001 Maize golgi, plasma membrane, plastid 50.25 51.41
CDY08628 Canola golgi, peroxisome, plasma membrane 49.5 50.9
CDY39794 Canola endoplasmic reticulum, nucleus, plasma membrane 49.25 50.65
TraesCS3A01G167000.1 Wheat plasma membrane 51.01 50.37
Bra034473.1-P Field mustard extracellular, golgi, plasma membrane 23.37 50.27
CDY03280 Canola plasma membrane 48.49 49.23
CDY24881 Canola extracellular 23.12 47.92
EER99979 Sorghum plastid 50.5 47.86
Bra034474.1-P Field mustard peroxisome 26.13 47.71
Os01t0247700-01 Rice extracellular, plasma membrane 41.21 47.26
Os05t0269200-00 Rice cytosol, golgi, plasma membrane 45.73 45.61
CDY00628 Canola endoplasmic reticulum, extracellular, plasma membrane 9.3 45.12
HORVU5Hr1G066120.1 Barley extracellular, plasma membrane 28.64 41.76
HORVU2Hr1G118150.1 Barley peroxisome 28.14 37.46
HORVU3Hr1G098700.1 Barley extracellular, plasma membrane 30.15 36.36
CDY19523 Canola cytosol, extracellular, plasma membrane 10.8 33.86
CDY08625 Canola plasma membrane 16.58 32.84
CDY12934 Canola cytosol, extracellular, plasma membrane 10.8 31.39
Solyc08g079770.2.1 Tomato cytosol, peroxisome, plastid 36.18 25.95
Solyc03g007770.2.1 Tomato cytosol, nucleus, plasma membrane 33.42 22.81
Solyc09g014610.2.1 Tomato plasma membrane 32.66 21.89
Solyc06g036440.1.1 Tomato cytosol, peroxisome, plasma membrane 33.42 21.56
CDX97407 Canola cytosol 0.5 1.35
Protein Annotations
Gene3D:1.50.10.150MapMan:24.3.10GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0005623
GO:GO:0006810GO:GO:0006873GO:GO:0008150GO:GO:0008308GO:GO:0009987GO:GO:0015698
GO:GO:0016020GO:GO:0016021GO:GO:0019725GO:GO:0055085GO:GO:0098656InterPro:IPR038665
UniProt:K4BVH8PFAM:PF03595PANTHER:PTHR31269PANTHER:PTHR31269:SF7InterPro:SLAC/SLAHEnsemblPlantsGene:Solyc04g080990.1
EnsemblPlants:Solyc04g080990.1.1TMHMM:TMhelixUniParc:UPI0002765C91InterPro:Voltage-dep_anion_channelInterPro:Voltage-dep_anion_channel_sfSEG:seg
Description
No Description!
Coordinates
chr4:+:65052474..65054585
Molecular Weight (calculated)
45636.4 Da
IEP (calculated)
9.761
GRAVY (calculated)
0.464
Length
398 amino acids
Sequence
(BLAST)
001: MSMRITPTFD EITVTPNTHE SENQNTLPDI DITIDDSSLN SSENHSLRFF VFSMLTRIHA GYFRISLSLC WETLLWKTLL DPNNNETKFL HRVPQIIYRP
101: ILIFLWSFAL LILVLLSLLY LLKCVFRFNL VKREFLHHVG VNYLFAPWIS WLILLESYPF IIAPKHLVYK ALWWVFAVPV LILDVKIYGQ WFTKGKRFLT
201: AVANPTSHLS VIGNLVGARA AAKMGWQEVS VCLFSLGMVH YLVLFVTLYQ RLSGSDRLPA MLRPVFFLFS AAPSMASLAW ASITGTFDTA SKMFFYLSLF
301: LFTSLICRPS LFKKSMRKFN VAWWAYSYPV TLLALASTRY AKEVKGKVPH TIMLTLSSLS VLVIIALLLS TALYSKILLR DDDPSLKHSC LSETHSEY
Best Arabidopsis Sequence Match ( AT1G62280.1 )
(BLAST)
001: MEIPRQEIHI EIDNSIPSSK EFKTGLADAK PVVLMSALRS LHAGYFRISL SLCSQALLWK IMIAPESPSM SHMHSKLPSM AFHLLWYLAL VTQVSLCFLY
101: ALKCIFFFDK VKEEFLHYIG VNYLYAPSIS WLLMLQSAPM MEPNSVLYQT LFWIFAVPVL TLDIKLYGQW FTTEKRFLSM LANPASQVSV IANLVAARGA
201: AEMGWNECAL CMFSLGMVHY LVIFVTLYQR LPGGNNFPAK LRPIFFLFVA APAMASLAWN SICGTFDAVA KMLFFLSLFI FMSLVCRPNL FKKSMKRFNV
301: AWWAYSFPLT FLALDSVQYA QEVKDPVGSG LMLIFSSISV LIFLGMMVLT AANSNRLLRH DPVLGSATDP KDKQKTLSLN ATNQN
Arabidopsis Description
SLAH1SLAH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8P4]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.