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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, nucleus, plasma membrane

Predictor Summary:
  • nucleus 2
  • endoplasmic reticulum 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, nucleus, plasma membrane
Any Predictor:endoplasmic reticulum, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:endoplasmic reticulum
PProwler:secretory
WoLF PSORT:nucleus
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra036662.1-P Field mustard endoplasmic reticulum, plasma membrane 62.02 98.36
CDY03280 Canola plasma membrane 95.35 94.13
CDY12936 Canola plasma membrane 88.37 89.76
CDY08628 Canola golgi, peroxisome, plasma membrane 89.41 89.41
CDY00627 Canola endoplasmic reticulum, extracellular, plasma membrane 42.64 85.49
AT1G62280.1 Thale cress plasma membrane 82.69 83.12
CDY19522 Canola endoplasmic reticulum 42.38 82.41
CDY12933 Canola endoplasmic reticulum, extracellular, plasma membrane 42.38 80.79
CDY24881 Canola extracellular 38.24 77.08
CDY00628 Canola endoplasmic reticulum, extracellular, plasma membrane 15.76 74.39
CDY19523 Canola cytosol, extracellular, plasma membrane 19.38 59.06
GSMUA_Achr6P07610_001 Banana golgi, mitochondrion, plasma membrane, plastid 50.39 57.69
CDY12934 Canola cytosol, extracellular, plasma membrane 19.9 56.2
KRH51762 Soybean mitochondrion 45.22 55.73
CDY08625 Canola plasma membrane 28.68 55.22
KRH56158 Soybean golgi, peroxisome, plasma membrane 52.71 55.14
Solyc07g051950.2.1 Tomato cytosol, endoplasmic reticulum, plasma membrane 50.13 54.34
KRH25357 Soybean plasma membrane 41.86 54.18
Solyc03g031590.2.1 Tomato cytosol, peroxisome, plasma membrane 51.68 53.62
GSMUA_Achr10P... Banana endoplasmic reticulum 48.84 52.35
GSMUA_Achr1P25300_001 Banana cytosol, endoplasmic reticulum, plasma membrane 51.16 51.97
KRH51125 Soybean plasma membrane 50.13 51.73
VIT_12s0059g00860.t01 Wine grape peroxisome, plasma membrane, plastid 51.42 51.55
KRH02037 Soybean plasma membrane 49.61 51.47
VIT_18s0001g13440.t01 Wine grape golgi, plasma membrane, vacuole 41.6 51.44
KRH61084 Soybean golgi, peroxisome, plasma membrane 51.42 51.42
GSMUA_Achr9P21990_001 Banana plasma membrane 48.84 50.0
GSMUA_Achr7P17640_001 Banana golgi, plasma membrane, plastid 49.61 50.0
Solyc04g080990.1.1 Tomato cytosol, golgi, peroxisome 50.65 49.25
TraesCS3B01G199200.1 Wheat plasma membrane 49.35 48.85
TraesCS3D01G174800.1 Wheat plasma membrane 48.84 48.59
HORVU3Hr1G033800.1 Barley plastid 49.35 48.35
Zm00001d039241_P001 Maize golgi, plasma membrane, plastid 48.32 48.07
TraesCS3A01G167000.1 Wheat plasma membrane 49.1 47.15
Os05t0269200-00 Rice cytosol, golgi, plasma membrane 46.25 44.86
EER99979 Sorghum plastid 48.58 44.76
Os01t0247700-01 Rice extracellular, plasma membrane 39.53 44.09
HORVU5Hr1G066120.1 Barley extracellular, plasma membrane 27.39 38.83
HORVU2Hr1G118150.1 Barley peroxisome 27.39 35.45
HORVU3Hr1G098700.1 Barley extracellular, plasma membrane 28.17 33.03
CDX84361 Canola plasma membrane 31.27 31.03
CDX97408 Canola cytosol, peroxisome, plasma membrane, plastid 32.3 24.9
CDX92855 Canola plastid 31.78 24.7
CDY29871 Canola plastid 31.52 24.55
CDX98059 Canola cytosol, peroxisome, plastid 32.56 22.7
CDY30084 Canola plasma membrane 33.07 21.84
CDY19015 Canola plastid 31.78 19.31
CDX89215 Canola plastid 31.78 19.31
CDY14262 Canola plastid 32.04 19.14
CDX87147 Canola cytosol, nucleus, plasma membrane 30.49 18.94
CDX80404 Canola cytosol 30.23 18.4
CDY44267 Canola cytosol 28.68 18.08
CDY46973 Canola cytosol 28.42 17.8
CDX88065 Canola cytosol 30.23 15.7
CDX97407 Canola cytosol 0.52 1.35
Protein Annotations
Gene3D:1.50.10.150MapMan:24.3.10GO:A0A078HR45UniProt:A0A078HR45EnsemblPlants:CDY39794ProteinID:CDY39794
ProteinID:CDY39794.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0005623GO:GO:0006810
GO:GO:0006873GO:GO:0008150GO:GO:0008308GO:GO:0009987GO:GO:0015698GO:GO:0016020
GO:GO:0016021GO:GO:0019725GO:GO:0055085GO:GO:0098656EnsemblPlantsGene:GSBRNA2T00068601001InterPro:IPR038665
PFAM:PF03595PANTHER:PTHR31269PANTHER:PTHR31269:SF7InterPro:SLAC/SLAHTMHMM:TMhelixUniParc:UPI0004EDE955
InterPro:Voltage-dep_anion_channelInterPro:Voltage-dep_anion_channel_sfSEG:seg:::
Description
BnaA09g10460DBnaA09g10460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HR45]
Coordinates
chrLK032457:-:188282..189709
Molecular Weight (calculated)
43460.0 Da
IEP (calculated)
9.315
GRAVY (calculated)
0.518
Length
387 amino acids
Sequence
(BLAST)
001: MESLEIPRQE VHIKIDDSLS TTKERNTDLP HAKPIVLMSV LSSLHAGYFR ISLSLCSQAL LWKIMIAPHS LSMSHLQSSL PSMAFHLLWY LALATQLSLC
101: VLYALKCFFF FDLVKEEFSH YIGVNYLYAP SISWLILLQS APMMEPQSVL YQTLFSVFAL PVLALDTKLY GQWFTTEKRF LSMMANPASQ VSVIANLVAA
201: RGAAEIGWME CALCLFSLGM VHYLVIFVTL YQRLPGGKNF PTKLRPVFFL FFAAPAMGSL AWNSICGSFD PLAKMLFFLS LFIFMSLVCR PNLFKKAMKR
301: FNVAWWAYSF PITFLALDSV QYAQDVKDQV ASGMMLIFSS ISVLIFLGMM VLTAANSNRL LRRDPVLGSA ASPKDKQRSS RLGAATC
Best Arabidopsis Sequence Match ( AT1G62280.1 )
(BLAST)
001: MEIPRQEIHI EIDNSIPSSK EFKTGLADAK PVVLMSALRS LHAGYFRISL SLCSQALLWK IMIAPESPSM SHMHSKLPSM AFHLLWYLAL VTQVSLCFLY
101: ALKCIFFFDK VKEEFLHYIG VNYLYAPSIS WLLMLQSAPM MEPNSVLYQT LFWIFAVPVL TLDIKLYGQW FTTEKRFLSM LANPASQVSV IANLVAARGA
201: AEMGWNECAL CMFSLGMVHY LVIFVTLYQR LPGGNNFPAK LRPIFFLFVA APAMASLAWN SICGTFDAVA KMLFFLSLFI FMSLVCRPNL FKKSMKRFNV
301: AWWAYSFPLT FLALDSVQYA QEVKDPVGSG LMLIFSSISV LIFLGMMVLT AANSNRLLRH DPVLGSATDP KDKQKTLSLN ATNQN
Arabidopsis Description
SLAH1SLAH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8P4]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.