Factsheet for Bra011427.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra024839.1-P
Bra024840.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33210.1	Bra024839.1-P	AT2G01950.1	19000166
AT4G33210.1	Bra024840.1-P	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75339	Canola	cytosol	98.64	67.32
CDX68956	Canola	cytosol	97.88	66.12
Bra037014.1-P	Field mustard	nucleus	91.52	61.26
AT4G33210.1	Thale cress	cytosol	91.82	61.21
Bra034552.1-P	Field mustard	nucleus	76.67	59.39
Bra034551.1-P	Field mustard	cytosol	75.61	56.07
KRH52245	Soybean	nucleus	68.48	50.62
KRH61576	Soybean	nucleus	63.64	46.72
KRH15607	Soybean	cytosol	68.48	46.36
KRH05410	Soybean	cytosol	68.48	46.03
PGSC0003DMT400048411	Potato	cytosol	66.82	45.94
VIT_04s0008g01890.t01	Wine grape	nucleus	68.33	45.51
Solyc08g061820.2.1	Tomato	cytosol	67.58	45.46
Os10t0396400-01	Rice	mitochondrion	43.94	44.34
GSMUA_Achr7P11390_001	Banana	cytosol	56.67	42.31
GSMUA_Achr11P...	Banana	cytosol, nucleus, vacuole	44.55	40.89
OQU91850	Sorghum	cytosol	57.42	38.24
TraesCS1B01G154100.1	Wheat	cytosol	58.03	37.7
TraesCS1D01G136800.4	Wheat	cytosol	57.73	37.5
TraesCS1A01G136200.1	Wheat	cytosol	54.7	37.45
Zm00001d014232_P014	Maize	cytosol	54.55	34.22
Zm00001d033037_P008	Maize	cytosol	51.06	31.97

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra011427	EnsemblPlants:Bra011427.1	EnsemblPlants:Bra011427.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M4D4M3	PFAM:PF00646
PFAM:PF13516	PANTHER:PTHR44842	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF52058
SUPFAM:SSF81383	UniParc:UPI0002545E94	SEG:seg	:	:	:

Description

AT4G33210 (E=5e-168) | F-box family protein (FBL15)

Coordinates

chrA01:+:2216241..2220577

Molecular Weight (calculated)

72457.9 Da

IEP (calculated)

4.971

GRAVY (calculated)

0.168

Length

660 amino acids

Sequence
(BLAST)

001: MFCQNFILNY AGRKDGKRDD GDDNGSSDAE DFEVHIDLTD DLLHMVFSFL SHIDLGRSAM VCRQWRVASA HEDFWKVLNF ENMRISIEQF EDMCHRYPNA
101: TEVNVYGAPA VNALAMKAAT TLRNLEVLII GKGHISENFF QALEECNMLR SVTVNEAILG NGAQEINLSH DRLRELKITK CRVMRLSLRC PQLRSLSLKR
201: SNMSRAMLNC PLLQLLDMAS GQNLLDAAIR SATISCPQLE SLDVSNCSCV SDETLREIAQ ACAGLHVLNA SYCPNISLES VHLPMLTVLK LHSCEGITSA
301: SMTWIANSHA LEVLELDNCN LLTSVALHLS RLQSISLVHC RKFTELNLQS TMLSSITISN CPALRRITIA SNSLRRLALQ KQENLTTLVL HCQSLQEVDL
401: SDCESLSNTV CEIFSDDGGC PMLKSLILDN CESLTEVRFC NSSLATLSLV GCRAVTSLEL KCPRIEEICL DGCDHLETAL FQPVALRSLN LGICPKLSVL
501: NIEAPYMVSL ELKGCGVLSE ASIICPLLTS LDASFCGQLT DDCLSATTAS CPLIESLVLM SCPSIGSDGL SSLNGLPNLT VLDLSYTFLM NLEPIFKSCI
601: QLKSCNMDEA GVEAAISGCC SLETLDLRFC PKISSVSMGR FRTVCPSLKR VFSSPNLLQD

Best Arabidopsis Sequence Match ( AT4G33210.1 )
(BLAST)

001: MRIWCFSCFT DEDEDEEDDN GGRVKKQSLA TAMDNSNGDG DFVNFGENER APRVPRWRLR LCAEESEAAW AELDRFWTSE IPLNQLVQGE SSSNVVAEAE
101: DCTMEEADHD SYHKRAKVYS GLAECRSVSG VSSDAGNSVS SVERTVSFGI ASSSRTDTDM FCQNFILNYN RKDGKKDDGD DNGSSDTEDF EVHIDLTDDL
201: LHMVFSFLNH VDLCRSAMVC RQWRVASAHE DFWRVLNFEN IRISMEQFEN MCSRYPNATE VNVYGAPAVN ALAMKAATTL RNLEVLTIGK GHISESFFQA
301: LGECNMLRSV TVSDAILGNG AQEIHLSHDR LRELKITKCR VMRLSIRCPQ LRSLSLKRSN MSQAMLNCPL LQLLDIASCH KLLDAAIRSA AISCPQLESL
401: DVSNCSCVSD ETLREIAQAC ANLHILNASY CPNISLESVH LPMLTVLKLH SCEGITSASM TWIANSPALE VLELDNCNLL TTVSLHLSRL QSISLVHCRK
501: FTDLNLQSIM LSSITVSNCP ALRRITITSN ALRRLALQKQ ENLTTLVLQC HSLQEVDLSD CESLSNSVCK IFSDDGGCPM LKSLILDNCE SLTAVRFCNS
601: SLASLSLVGC RAVTSLELKC PRIEQICLDG CDHLETAFFQ PVALRSLNLG ICPKLSVLNI EAPYMVSLEL KGCGVLSEAS IMCPLLTSLD ASFCSQLRDD
701: CLSATTASCP LIESLVLMSC PSIGSDGLSS LNGLPNLTVL DLSYTFLMNL EPVFKSCIQL KVLKLQACKY LTDSSLEPLY KEGALPALEE LDLSYGTLCQ
801: TAIDDLLACC THLTHLSLNG CVNMHDLDWG STSVHLFDYF GVYSSSDNTQ EPAETANRLL QNLNCVGCPN IRKVLIPPAA RFYHLSTLNL SLSVNLKEVD
901: LTCSNLVLLN LSNCCSLEVL KLGCPRLASL FLQSCNMDEA GVEAAISGCS SLETLDLRFC PKISSVSMSK FRTVCPSLKR VFSSPNLLQD

Arabidopsis Description

FBL15SLOMO [Source:UniProtKB/TrEMBL;Acc:A0A178V148]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.