Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011427.1-P | Field mustard | cytosol | 61.21 | 91.82 |
| CDX75339 | Canola | cytosol | 87.27 | 89.35 |
| CDX68956 | Canola | cytosol | 87.07 | 88.23 |
| CDY46126 | Canola | cytosol | 85.76 | 86.54 |
| Bra037014.1-P | Field mustard | nucleus | 85.45 | 85.8 |
| Bra034552.1-P | Field mustard | nucleus | 67.47 | 78.4 |
| CDY28286 | Canola | nucleus | 68.99 | 78.06 |
| CDY28285 | Canola | cytosol | 69.29 | 76.91 |
| CDY45032 | Canola | nucleus | 67.37 | 76.49 |
| Bra034551.1-P | Field mustard | cytosol | 67.68 | 75.28 |
| CDY45031 | Canola | cytosol | 67.58 | 75.17 |
| KRH52245 | Soybean | nucleus | 59.39 | 65.85 |
| KRH15607 | Soybean | cytosol | 61.52 | 62.46 |
| KRH61576 | Soybean | nucleus | 56.46 | 62.18 |
| VIT_04s0008g01890.t01 | Wine grape | nucleus | 62.12 | 62.06 |
| KRH05410 | Soybean | cytosol | 61.11 | 61.61 |
| Solyc08g061820.2.1 | Tomato | cytosol | 61.01 | 61.57 |
| PGSC0003DMT400048411 | Potato | cytosol | 59.7 | 61.56 |
| Os10t0396400-01 | Rice | mitochondrion | 40.3 | 61.01 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, vacuole | 40.0 | 55.08 |
| GSMUA_Achr7P11390_001 | Banana | cytosol | 48.99 | 54.86 |
| OQU91850 | Sorghum | cytosol | 50.71 | 50.66 |
| TraesCS1A01G136200.1 | Wheat | cytosol | 48.79 | 50.1 |
| TraesCS1B01G154100.1 | Wheat | cytosol | 51.41 | 50.1 |
| TraesCS1D01G136800.4 | Wheat | cytosol | 51.31 | 50.0 |
| Zm00001d014232_P014 | Maize | cytosol | 48.08 | 45.25 |
| Zm00001d033037_P008 | Maize | cytosol | 46.46 | 43.64 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:829457 | UniProt:A0A178V148 | ProteinID:AEE86191.1 | EMBL:AK117894 |
| ArrayExpress:AT4G33210 | EnsemblPlantsGene:AT4G33210 | RefSeq:AT4G33210 | TAIR:AT4G33210 | RefSeq:AT4G33210-TAIR-G | EnsemblPlants:AT4G33210.1 |
| TAIR:AT4G33210.1 | ProteinID:CAB36795.1 | ProteinID:CAB80038.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0010252 | GO:GO:1905393 |
| InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp | RefSeq:NP_567916.2 | ProteinID:OAP00067.1 |
| PFAM:PF12937 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50181 |
| PANTHER:PTHR44842 | UniProt:Q9SMY8 | Symbol:SLOMO | SMART:SM00256 | SMART:SM00367 | SUPFAM:SSF52058 |
| SUPFAM:SSF81383 | UniParc:UPI0000ED911E | SEG:seg | : | : | : |
Description
FBL15SLOMO [Source:UniProtKB/TrEMBL;Acc:A0A178V148]
Coordinates
chr4:-:16015640..16021230
Molecular Weight (calculated)
108905.0 Da
IEP (calculated)
4.777
GRAVY (calculated)
0.034
Length
990 amino acids
Sequence
(BLAST)
(BLAST)
001: MRIWCFSCFT DEDEDEEDDN GGRVKKQSLA TAMDNSNGDG DFVNFGENER APRVPRWRLR LCAEESEAAW AELDRFWTSE IPLNQLVQGE SSSNVVAEAE
101: DCTMEEADHD SYHKRAKVYS GLAECRSVSG VSSDAGNSVS SVERTVSFGI ASSSRTDTDM FCQNFILNYN RKDGKKDDGD DNGSSDTEDF EVHIDLTDDL
201: LHMVFSFLNH VDLCRSAMVC RQWRVASAHE DFWRVLNFEN IRISMEQFEN MCSRYPNATE VNVYGAPAVN ALAMKAATTL RNLEVLTIGK GHISESFFQA
301: LGECNMLRSV TVSDAILGNG AQEIHLSHDR LRELKITKCR VMRLSIRCPQ LRSLSLKRSN MSQAMLNCPL LQLLDIASCH KLLDAAIRSA AISCPQLESL
401: DVSNCSCVSD ETLREIAQAC ANLHILNASY CPNISLESVH LPMLTVLKLH SCEGITSASM TWIANSPALE VLELDNCNLL TTVSLHLSRL QSISLVHCRK
501: FTDLNLQSIM LSSITVSNCP ALRRITITSN ALRRLALQKQ ENLTTLVLQC HSLQEVDLSD CESLSNSVCK IFSDDGGCPM LKSLILDNCE SLTAVRFCNS
601: SLASLSLVGC RAVTSLELKC PRIEQICLDG CDHLETAFFQ PVALRSLNLG ICPKLSVLNI EAPYMVSLEL KGCGVLSEAS IMCPLLTSLD ASFCSQLRDD
701: CLSATTASCP LIESLVLMSC PSIGSDGLSS LNGLPNLTVL DLSYTFLMNL EPVFKSCIQL KVLKLQACKY LTDSSLEPLY KEGALPALEE LDLSYGTLCQ
801: TAIDDLLACC THLTHLSLNG CVNMHDLDWG STSVHLFDYF GVYSSSDNTQ EPAETANRLL QNLNCVGCPN IRKVLIPPAA RFYHLSTLNL SLSVNLKEVD
901: LTCSNLVLLN LSNCCSLEVL KLGCPRLASL FLQSCNMDEA GVEAAISGCS SLETLDLRFC PKISSVSMSK FRTVCPSLKR VFSSPNLLQD
101: DCTMEEADHD SYHKRAKVYS GLAECRSVSG VSSDAGNSVS SVERTVSFGI ASSSRTDTDM FCQNFILNYN RKDGKKDDGD DNGSSDTEDF EVHIDLTDDL
201: LHMVFSFLNH VDLCRSAMVC RQWRVASAHE DFWRVLNFEN IRISMEQFEN MCSRYPNATE VNVYGAPAVN ALAMKAATTL RNLEVLTIGK GHISESFFQA
301: LGECNMLRSV TVSDAILGNG AQEIHLSHDR LRELKITKCR VMRLSIRCPQ LRSLSLKRSN MSQAMLNCPL LQLLDIASCH KLLDAAIRSA AISCPQLESL
401: DVSNCSCVSD ETLREIAQAC ANLHILNASY CPNISLESVH LPMLTVLKLH SCEGITSASM TWIANSPALE VLELDNCNLL TTVSLHLSRL QSISLVHCRK
501: FTDLNLQSIM LSSITVSNCP ALRRITITSN ALRRLALQKQ ENLTTLVLQC HSLQEVDLSD CESLSNSVCK IFSDDGGCPM LKSLILDNCE SLTAVRFCNS
601: SLASLSLVGC RAVTSLELKC PRIEQICLDG CDHLETAFFQ PVALRSLNLG ICPKLSVLNI EAPYMVSLEL KGCGVLSEAS IMCPLLTSLD ASFCSQLRDD
701: CLSATTASCP LIESLVLMSC PSIGSDGLSS LNGLPNLTVL DLSYTFLMNL EPVFKSCIQL KVLKLQACKY LTDSSLEPLY KEGALPALEE LDLSYGTLCQ
801: TAIDDLLACC THLTHLSLNG CVNMHDLDWG STSVHLFDYF GVYSSSDNTQ EPAETANRLL QNLNCVGCPN IRKVLIPPAA RFYHLSTLNL SLSVNLKEVD
901: LTCSNLVLLN LSNCCSLEVL KLGCPRLASL FLQSCNMDEA GVEAAISGCS SLETLDLRFC PKISSVSMSK FRTVCPSLKR VFSSPNLLQD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.