Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G33210.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT4G33210.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011427.1-P | Field mustard | cytosol | 66.12 | 97.88 |
| CDX75339 | Canola | cytosol | 95.91 | 96.9 |
| AT4G33210.1 | Thale cress | cytosol | 88.23 | 87.07 |
| CDY46126 | Canola | cytosol | 86.59 | 86.24 |
| CDY28286 | Canola | nucleus | 70.01 | 78.17 |
| CDY28285 | Canola | cytosol | 71.14 | 77.91 |
| CDY45032 | Canola | nucleus | 68.47 | 76.72 |
| CDY45031 | Canola | cytosol | 69.7 | 76.52 |
| KRH52245 | Soybean | nucleus | 60.7 | 66.41 |
| KRH15607 | Soybean | cytosol | 62.23 | 62.36 |
| KRH61576 | Soybean | nucleus | 57.22 | 62.18 |
| KRH05410 | Soybean | cytosol | 61.82 | 61.51 |
| Solyc08g061820.2.1 | Tomato | cytosol | 61.41 | 61.16 |
| VIT_04s0008g01890.t01 | Wine grape | nucleus | 62.03 | 61.15 |
| PGSC0003DMT400048411 | Potato | cytosol | 60.08 | 61.15 |
| Os10t0396400-01 | Rice | mitochondrion | 39.71 | 59.33 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, vacuole | 40.23 | 54.66 |
| GSMUA_Achr7P11390_001 | Banana | cytosol | 48.62 | 53.73 |
| OQU91850 | Sorghum | cytosol | 50.56 | 49.85 |
| TraesCS1B01G154100.1 | Wheat | cytosol | 51.07 | 49.11 |
| TraesCS1D01G136800.4 | Wheat | cytosol | 50.97 | 49.02 |
| TraesCS1A01G136200.1 | Wheat | cytosol | 48.21 | 48.86 |
| Zm00001d014232_P014 | Maize | cytosol | 48.62 | 45.15 |
| Zm00001d033037_P008 | Maize | cytosol | 46.26 | 42.88 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EnsemblPlants:CDX68956 | ProteinID:CDX68956 | ProteinID:CDX68956.1 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00130702001 | InterPro:IPR001810 |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp | PFAM:PF00646 | PANTHER:PTHR44842 | SMART:SM00256 |
| SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF52058 | SUPFAM:SSF81383 | UniParc:UPI0004EEF314 | SEG:seg |
Description
BnaC01g04970D
Coordinates
chrLK031789:-:2195543..2201027
Molecular Weight (calculated)
107772.0 Da
IEP (calculated)
4.909
GRAVY (calculated)
0.008
Length
977 amino acids
Sequence
(BLAST)
(BLAST)
001: MRIWCFHCFT DDHHEEEENR NRGGVSHRLK KQSAMDDNNN NKGGDFVGFD LNDRELGVAE TLAREENGAE LERVRSSEIR LHQLVQGESS NEDCTMEEAD
101: HDSYHKRAKV YSDLAVSSDA GNSGSSVVER SVSFGVASSS RTDTDMFCQN FILNYTGRKD GKRDDGDDNG SSDAEDFEVH IDLTDDLLHM VFSFLSHIDL
201: CRSAMVCRQW RVASAHEDFW KVLNFENMRI SIEQFEDMCH RYPNATEVNV YGAPAVNALA MKAATTLRNL EVLIIGKGHI SENFFQALEE CNMLRSVTVN
301: EAILGNGAQE IHLSHDRLRE LKITKCRVMR LSLRCPQLRS LSLKRSNMSQ AMLNCPLLQL LDIASCHKLL DAAIRSAAIS CPQLESLDVS NCSCVSDETL
401: REIAQACARL HILNASYCPN ISLESVHLPM LTVLKLHSCE GITSASMTWI ANSHALEVLE LDNCNLLTSV ALHLSRLQSI SLVHCRKFTE LNLQSTMLSS
501: ITISNCPALR RITIASNSLR RLALQKQENL TTLVLQCQSL QEVDLSDCES LSNTVCEIFS DDGGCPMLKS LILDNCESLT EVRFCNSSLA TLSLVGCRAV
601: TSLELKCPRI EEICLDGCDH LETALFQPVA LRSLNLGICP KLNVLNIEAP YMVSLELKGC GVLSEASIIC PLLTSLDASF CGQLTDDCLS ATTASCPLIE
701: SLVLMSCPSI GSDGLSSLNG LPNLTVLDLS YTFLMSLEPI FKSCIQLKVL KLQACKYLTD SSLEPLYKEG ALPALEELDL SYGTLCQTAI DDLLAYCTHL
801: THLSLNGCVN MHDLDWGSTN VQLFDYFGGY ISSENTQEAA ETANRLLQNL NCVGCPNIRK VLIPPAARFY HLSSLNLSLS VNLKEVNLAC SNLVLLNLSN
901: CCSLEVLKLS CPRLASLFLQ SCNMDEAGVE AAISGCCSLE TLDLRFCPKI SSVSMGRFRT VCPSLKRVFS SPNLLQD
101: HDSYHKRAKV YSDLAVSSDA GNSGSSVVER SVSFGVASSS RTDTDMFCQN FILNYTGRKD GKRDDGDDNG SSDAEDFEVH IDLTDDLLHM VFSFLSHIDL
201: CRSAMVCRQW RVASAHEDFW KVLNFENMRI SIEQFEDMCH RYPNATEVNV YGAPAVNALA MKAATTLRNL EVLIIGKGHI SENFFQALEE CNMLRSVTVN
301: EAILGNGAQE IHLSHDRLRE LKITKCRVMR LSLRCPQLRS LSLKRSNMSQ AMLNCPLLQL LDIASCHKLL DAAIRSAAIS CPQLESLDVS NCSCVSDETL
401: REIAQACARL HILNASYCPN ISLESVHLPM LTVLKLHSCE GITSASMTWI ANSHALEVLE LDNCNLLTSV ALHLSRLQSI SLVHCRKFTE LNLQSTMLSS
501: ITISNCPALR RITIASNSLR RLALQKQENL TTLVLQCQSL QEVDLSDCES LSNTVCEIFS DDGGCPMLKS LILDNCESLT EVRFCNSSLA TLSLVGCRAV
601: TSLELKCPRI EEICLDGCDH LETALFQPVA LRSLNLGICP KLNVLNIEAP YMVSLELKGC GVLSEASIIC PLLTSLDASF CGQLTDDCLS ATTASCPLIE
701: SLVLMSCPSI GSDGLSSLNG LPNLTVLDLS YTFLMSLEPI FKSCIQLKVL KLQACKYLTD SSLEPLYKEG ALPALEELDL SYGTLCQTAI DDLLAYCTHL
801: THLSLNGCVN MHDLDWGSTN VQLFDYFGGY ISSENTQEAA ETANRLLQNL NCVGCPNIRK VLIPPAARFY HLSSLNLSLS VNLKEVNLAC SNLVLLNLSN
901: CCSLEVLKLS CPRLASLFLQ SCNMDEAGVE AAISGCCSLE TLDLRFCPKI SSVSMGRFRT VCPSLKRVFS SPNLLQD
001: MRIWCFSCFT DEDEDEEDDN GGRVKKQSLA TAMDNSNGDG DFVNFGENER APRVPRWRLR LCAEESEAAW AELDRFWTSE IPLNQLVQGE SSSNVVAEAE
101: DCTMEEADHD SYHKRAKVYS GLAECRSVSG VSSDAGNSVS SVERTVSFGI ASSSRTDTDM FCQNFILNYN RKDGKKDDGD DNGSSDTEDF EVHIDLTDDL
201: LHMVFSFLNH VDLCRSAMVC RQWRVASAHE DFWRVLNFEN IRISMEQFEN MCSRYPNATE VNVYGAPAVN ALAMKAATTL RNLEVLTIGK GHISESFFQA
301: LGECNMLRSV TVSDAILGNG AQEIHLSHDR LRELKITKCR VMRLSIRCPQ LRSLSLKRSN MSQAMLNCPL LQLLDIASCH KLLDAAIRSA AISCPQLESL
401: DVSNCSCVSD ETLREIAQAC ANLHILNASY CPNISLESVH LPMLTVLKLH SCEGITSASM TWIANSPALE VLELDNCNLL TTVSLHLSRL QSISLVHCRK
501: FTDLNLQSIM LSSITVSNCP ALRRITITSN ALRRLALQKQ ENLTTLVLQC HSLQEVDLSD CESLSNSVCK IFSDDGGCPM LKSLILDNCE SLTAVRFCNS
601: SLASLSLVGC RAVTSLELKC PRIEQICLDG CDHLETAFFQ PVALRSLNLG ICPKLSVLNI EAPYMVSLEL KGCGVLSEAS IMCPLLTSLD ASFCSQLRDD
701: CLSATTASCP LIESLVLMSC PSIGSDGLSS LNGLPNLTVL DLSYTFLMNL EPVFKSCIQL KVLKLQACKY LTDSSLEPLY KEGALPALEE LDLSYGTLCQ
801: TAIDDLLACC THLTHLSLNG CVNMHDLDWG STSVHLFDYF GVYSSSDNTQ EPAETANRLL QNLNCVGCPN IRKVLIPPAA RFYHLSTLNL SLSVNLKEVD
901: LTCSNLVLLN LSNCCSLEVL KLGCPRLASL FLQSCNMDEA GVEAAISGCS SLETLDLRFC PKISSVSMSK FRTVCPSLKR VFSSPNLLQD
101: DCTMEEADHD SYHKRAKVYS GLAECRSVSG VSSDAGNSVS SVERTVSFGI ASSSRTDTDM FCQNFILNYN RKDGKKDDGD DNGSSDTEDF EVHIDLTDDL
201: LHMVFSFLNH VDLCRSAMVC RQWRVASAHE DFWRVLNFEN IRISMEQFEN MCSRYPNATE VNVYGAPAVN ALAMKAATTL RNLEVLTIGK GHISESFFQA
301: LGECNMLRSV TVSDAILGNG AQEIHLSHDR LRELKITKCR VMRLSIRCPQ LRSLSLKRSN MSQAMLNCPL LQLLDIASCH KLLDAAIRSA AISCPQLESL
401: DVSNCSCVSD ETLREIAQAC ANLHILNASY CPNISLESVH LPMLTVLKLH SCEGITSASM TWIANSPALE VLELDNCNLL TTVSLHLSRL QSISLVHCRK
501: FTDLNLQSIM LSSITVSNCP ALRRITITSN ALRRLALQKQ ENLTTLVLQC HSLQEVDLSD CESLSNSVCK IFSDDGGCPM LKSLILDNCE SLTAVRFCNS
601: SLASLSLVGC RAVTSLELKC PRIEQICLDG CDHLETAFFQ PVALRSLNLG ICPKLSVLNI EAPYMVSLEL KGCGVLSEAS IMCPLLTSLD ASFCSQLRDD
701: CLSATTASCP LIESLVLMSC PSIGSDGLSS LNGLPNLTVL DLSYTFLMNL EPVFKSCIQL KVLKLQACKY LTDSSLEPLY KEGALPALEE LDLSYGTLCQ
801: TAIDDLLACC THLTHLSLNG CVNMHDLDWG STSVHLFDYF GVYSSSDNTQ EPAETANRLL QNLNCVGCPN IRKVLIPPAA RFYHLSTLNL SLSVNLKEVD
901: LTCSNLVLLN LSNCCSLEVL KLGCPRLASL FLQSCNMDEA GVEAAISGCS SLETLDLRFC PKISSVSMSK FRTVCPSLKR VFSSPNLLQD
Arabidopsis Description
FBL15SLOMO [Source:UniProtKB/TrEMBL;Acc:A0A178V148]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.