CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33210.1	KRH42483	AT2G01950.1	19000166
AT4G33210.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15607	Soybean	cytosol	87.27	87.9
KRH52245	Soybean	nucleus	70.67	77.72
KRH61576	Soybean	nucleus	68.02	74.3
Bra011427.1-P	Field mustard	cytosol	46.03	68.48
VIT_04s0008g01890.t01	Wine grape	nucleus	67.21	66.6
PGSC0003DMT400048411	Potato	cytosol	63.54	65.0
Os10t0396400-01	Rice	mitochondrion	42.97	64.53
Solyc08g061820.2.1	Tomato	cytosol	63.75	63.81
CDX75339	Canola	cytosol	61.51	62.46
CDX68956	Canola	cytosol	61.51	61.82
AT4G33210.1	Thale cress	cytosol	61.61	61.11
CDY28286	Canola	nucleus	54.18	60.8
CDY46126	Canola	cytosol	60.59	60.65
Bra037014.1-P	Field mustard	nucleus	60.59	60.34
Bra034552.1-P	Field mustard	nucleus	51.83	59.74
CDY28285	Canola	cytosol	52.85	58.18
GSMUA_Achr11P...	Banana	cytosol, nucleus, vacuole	42.57	58.14
CDY45032	Canola	nucleus	51.53	58.03
CDY45031	Canola	cytosol	52.14	57.53
Bra034551.1-P	Field mustard	cytosol	51.93	57.3
GSMUA_Achr7P11390_001	Banana	cytosol	51.22	56.9
OQU91850	Sorghum	cytosol	52.34	51.87
TraesCS1B01G154100.1	Wheat	cytosol	52.04	50.3
TraesCS1D01G136800.4	Wheat	cytosol	51.93	50.2
TraesCS1A01G136200.1	Wheat	cytosol	48.98	49.9
Zm00001d014232_P014	Maize	cytosol	51.02	47.62
Zm00001d033037_P008	Maize	cytosol	48.27	44.97

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100817100	Gene3D:3.80.10.10	MapMan:35.1	EMBL:ACUP02010743	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_17G225800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1MX78
InterPro:IPR001810	InterPro:IPR032675	EnsemblPlants:KRH05410	ProteinID:KRH05410	ProteinID:KRH05410.1	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR44842	SMART:SM00256	SMART:SM00367
SUPFAM:SSF52047	SUPFAM:SSF52058	SUPFAM:SSF81383	UniParc:UPI000233E3A1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:+:38002953..38010272

Molecular Weight (calculated)

107868.0 Da

IEP (calculated)

4.627

GRAVY (calculated)

0.099

Length

982 amino acids

Sequence
(BLAST)

001: MKLWCCPWLC FTEEEEEEEE EERKFPKPMK EGDIIFGNVV VSDDDDGDGD GNDTRGDDKQ FAMVRADVLG SWPGESSSTA AAECLDIAAA GESRDLSNKR
101: AKFYADFEEH HFSTGKCSAS NEYVDYNFSI KGTLRPNGET CYDAFSLMGV VEENSSGFDS RIVKEGGEGD DSDISKVEED VEVRMDLTDD LLHMVFSFLD
201: HPNLCKAARV CKQWRGASAH EDFWKSLNFE DRNISVEQFE DMCSRYPNAT AVSLSGSAIY LLVMKAICSL RNLEFLTLGR GQIADTFFHA LADCSMLRRL
301: NINDSILGNG IQEITINHDR LCHLQLTKCR VMRIAVRCPQ LETMSLKRSN MAQVVLNCPL LHELDIGSCH KLPDAAIRAA ATSCPQLVSL DMSNCSCVSD
401: ETLREIALSC ANLSFLDASY CSNISLESVR LPMLTVLKLH SCEGITSASM AAIAHSYMLE VLELDNCSLL TSVSLDLPRL QTIRLVHCRK FADLNMRTMM
501: LSSILVSNCP ALHRINITSN SLQKLALQKQ DSLTMLALQC QSLQEVDLSE CESLTNSICD VFSDGGGCPM LKSLVLDNCE SLTSVRFIST SLVSLSLGGC
601: RAITSLELTC PNLEKVILDG CDHLERASFC PVGLRSLNLG ICPKLNILSI EAMFMVSLEL KGCGVLSEAS LNCPLLTSLD ASFCSQLTDE CLSATTASCP
701: LIESLILMSC PSIGLDGLCS LRWLPNLTLL DLSYTFLVNL QPIFESCSQL KVLKLQACKY LTDSSLEPLY KGALPVLQEL DLSYGTLCQS AIEELLSCCT
801: HLTRVSLNGC ANMHDLNWGC SRAHTAELPG VNVLPIASSP ENVLELSEQP IRLLQNLNCV GCPNIRKVFI PSTAHCSRLL FLNLSLSANL KEVDVACLNL
901: SWLNLSNCSS LEVLKLECPR LTSLFLQSCN INEEAVEAAI SKCTMLETLD VRFCPKISSM SMGRLRAACS SLKRIFSSLS AS

Best Arabidopsis Sequence Match ( AT4G33210.1 )
(BLAST)

001: MRIWCFSCFT DEDEDEEDDN GGRVKKQSLA TAMDNSNGDG DFVNFGENER APRVPRWRLR LCAEESEAAW AELDRFWTSE IPLNQLVQGE SSSNVVAEAE
101: DCTMEEADHD SYHKRAKVYS GLAECRSVSG VSSDAGNSVS SVERTVSFGI ASSSRTDTDM FCQNFILNYN RKDGKKDDGD DNGSSDTEDF EVHIDLTDDL
201: LHMVFSFLNH VDLCRSAMVC RQWRVASAHE DFWRVLNFEN IRISMEQFEN MCSRYPNATE VNVYGAPAVN ALAMKAATTL RNLEVLTIGK GHISESFFQA
301: LGECNMLRSV TVSDAILGNG AQEIHLSHDR LRELKITKCR VMRLSIRCPQ LRSLSLKRSN MSQAMLNCPL LQLLDIASCH KLLDAAIRSA AISCPQLESL
401: DVSNCSCVSD ETLREIAQAC ANLHILNASY CPNISLESVH LPMLTVLKLH SCEGITSASM TWIANSPALE VLELDNCNLL TTVSLHLSRL QSISLVHCRK
501: FTDLNLQSIM LSSITVSNCP ALRRITITSN ALRRLALQKQ ENLTTLVLQC HSLQEVDLSD CESLSNSVCK IFSDDGGCPM LKSLILDNCE SLTAVRFCNS
601: SLASLSLVGC RAVTSLELKC PRIEQICLDG CDHLETAFFQ PVALRSLNLG ICPKLSVLNI EAPYMVSLEL KGCGVLSEAS IMCPLLTSLD ASFCSQLRDD
701: CLSATTASCP LIESLVLMSC PSIGSDGLSS LNGLPNLTVL DLSYTFLMNL EPVFKSCIQL KVLKLQACKY LTDSSLEPLY KEGALPALEE LDLSYGTLCQ
801: TAIDDLLACC THLTHLSLNG CVNMHDLDWG STSVHLFDYF GVYSSSDNTQ EPAETANRLL QNLNCVGCPN IRKVLIPPAA RFYHLSTLNL SLSVNLKEVD
901: LTCSNLVLLN LSNCCSLEVL KLGCPRLASL FLQSCNMDEA GVEAAISGCS SLETLDLRFC PKISSVSMSK FRTVCPSLKR VFSSPNLLQD

Arabidopsis Description

FBL15SLOMO [Source:UniProtKB/TrEMBL;Acc:A0A178V148]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.