Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G33210.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT4G33210.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45032 | Canola | nucleus | 91.54 | 91.86 |
| CDY28285 | Canola | cytosol | 81.26 | 79.71 |
| CDY45031 | Canola | cytosol | 77.83 | 76.52 |
| CDX75339 | Canola | cytosol | 78.17 | 70.73 |
| CDX68956 | Canola | cytosol | 78.17 | 70.01 |
| AT4G33210.1 | Thale cress | cytosol | 78.06 | 68.99 |
| CDY46126 | Canola | cytosol | 76.8 | 68.5 |
| KRH52245 | Soybean | nucleus | 60.23 | 59.01 |
| Os10t0396400-01 | Rice | mitochondrion | 41.71 | 55.81 |
| PGSC0003DMT400048411 | Potato | cytosol | 60.46 | 55.1 |
| KRH61576 | Soybean | nucleus | 56.46 | 54.95 |
| KRH05410 | Soybean | cytosol | 60.8 | 54.18 |
| Solyc08g061820.2.1 | Tomato | cytosol | 60.57 | 54.03 |
| VIT_04s0008g01890.t01 | Wine grape | nucleus | 61.03 | 53.88 |
| KRH15607 | Soybean | cytosol | 59.89 | 53.74 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, vacuole | 42.29 | 51.46 |
| GSMUA_Achr7P11390_001 | Banana | cytosol | 50.4 | 49.89 |
| OQU91850 | Sorghum | cytosol | 52.69 | 46.52 |
| TraesCS1D01G136800.4 | Wheat | cytosol | 53.03 | 45.67 |
| TraesCS1B01G154100.1 | Wheat | cytosol | 52.69 | 45.37 |
| TraesCS1A01G136200.1 | Wheat | cytosol | 49.49 | 44.92 |
| Zm00001d014232_P014 | Maize | cytosol | 50.97 | 42.4 |
| Zm00001d033037_P008 | Maize | cytosol | 48.46 | 40.23 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | UniProt:A0A078GS02 | EnsemblPlants:CDY28286 | ProteinID:CDY28286 | ProteinID:CDY28286.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00040029001 |
| InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp | PFAM:PF12937 | PANTHER:PTHR44842 |
| SMART:SM00256 | SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF52058 | SUPFAM:SSF81383 | UniParc:UPI0004EE58E0 |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g66730DBnaC03g66730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GS02]
Coordinates
chrLK032217:-:128199..133081
Molecular Weight (calculated)
96421.2 Da
IEP (calculated)
6.804
GRAVY (calculated)
0.146
Length
875 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEGELKRVW SSTDAEDDDT YHKRPKLECP ASASSDSSSM EERTVASSSR THMFCHNFIL NHGRKDDDSQ VRFDLTDDVL HVVFSFLKHV DLCRSAMVCR
101: QWRVASAHED FWRVLKFKNM SISIDQFENM CRRYPNATRV NVYGVPAVNA LAMKAATSFR NLEILTIGNG QISENFFQIL GECNSLRSVT ISDAILGSVP
201: QEIHLSHDRL HKLKIRKCSA LRLSIRCPQL RSLSLKRSDM VLAMLNCPLL QHLDIASCHK LQDADIRSAV TSCPQLESLD VSNSSCLGNE TLREIAQACA
301: ALHILNASHC SNISFESVHL PMLTVLKLRS CERITSASMT WIANSPALEV LELDNCNMFT SVALHLSCLQ SLILLNCRKF VELNLQSTML SSITIANCRA
401: LRRVTITSNA LRRLALKKQE NLTALVLQCQ SLQEVDLSGC KSLSNTACES FSDVGGCPLL KSLILDNCES LTEVRFCNSS LSSLSLVGCR AVTSLALKCP
501: RLEQICLDGC DNLETAFFKP VALRSLNLGI CPKLSVLSIE APYMVSLDLK CFGGLSEASI ICPLLTSLDA SFCGQLRDDC LRAITASCPL IESLVLMSCS
601: SIGSVGFSSL KGLQNLIVLD LSYTCVMNLE PIFKSCIQLK VLKLQACKDL TDSSLEPLYK EGALPALEEL DLSYGTLCQT TIDNLLVCCT HLTHLSLNGC
701: VNMHDLEHDW GSGESNQEPA ETSTNRLLQN LSCVGCPNIR KVLIPPAARF NHLSSLNLSL CVNLKEVDLA CSNLVLLNLS NCCSLEVLKL GCPRLSTLFL
801: QSCKMDEARV EAAISGCCSL ETLDLRFCSK ISSVSMVRLQ TVCPSLKRVF SSPNLLQDQG FASNVLLYTT LSRLY
101: QWRVASAHED FWRVLKFKNM SISIDQFENM CRRYPNATRV NVYGVPAVNA LAMKAATSFR NLEILTIGNG QISENFFQIL GECNSLRSVT ISDAILGSVP
201: QEIHLSHDRL HKLKIRKCSA LRLSIRCPQL RSLSLKRSDM VLAMLNCPLL QHLDIASCHK LQDADIRSAV TSCPQLESLD VSNSSCLGNE TLREIAQACA
301: ALHILNASHC SNISFESVHL PMLTVLKLRS CERITSASMT WIANSPALEV LELDNCNMFT SVALHLSCLQ SLILLNCRKF VELNLQSTML SSITIANCRA
401: LRRVTITSNA LRRLALKKQE NLTALVLQCQ SLQEVDLSGC KSLSNTACES FSDVGGCPLL KSLILDNCES LTEVRFCNSS LSSLSLVGCR AVTSLALKCP
501: RLEQICLDGC DNLETAFFKP VALRSLNLGI CPKLSVLSIE APYMVSLDLK CFGGLSEASI ICPLLTSLDA SFCGQLRDDC LRAITASCPL IESLVLMSCS
601: SIGSVGFSSL KGLQNLIVLD LSYTCVMNLE PIFKSCIQLK VLKLQACKDL TDSSLEPLYK EGALPALEEL DLSYGTLCQT TIDNLLVCCT HLTHLSLNGC
701: VNMHDLEHDW GSGESNQEPA ETSTNRLLQN LSCVGCPNIR KVLIPPAARF NHLSSLNLSL CVNLKEVDLA CSNLVLLNLS NCCSLEVLKL GCPRLSTLFL
801: QSCKMDEARV EAAISGCCSL ETLDLRFCSK ISSVSMVRLQ TVCPSLKRVF SSPNLLQDQG FASNVLLYTT LSRLY
001: MRIWCFSCFT DEDEDEEDDN GGRVKKQSLA TAMDNSNGDG DFVNFGENER APRVPRWRLR LCAEESEAAW AELDRFWTSE IPLNQLVQGE SSSNVVAEAE
101: DCTMEEADHD SYHKRAKVYS GLAECRSVSG VSSDAGNSVS SVERTVSFGI ASSSRTDTDM FCQNFILNYN RKDGKKDDGD DNGSSDTEDF EVHIDLTDDL
201: LHMVFSFLNH VDLCRSAMVC RQWRVASAHE DFWRVLNFEN IRISMEQFEN MCSRYPNATE VNVYGAPAVN ALAMKAATTL RNLEVLTIGK GHISESFFQA
301: LGECNMLRSV TVSDAILGNG AQEIHLSHDR LRELKITKCR VMRLSIRCPQ LRSLSLKRSN MSQAMLNCPL LQLLDIASCH KLLDAAIRSA AISCPQLESL
401: DVSNCSCVSD ETLREIAQAC ANLHILNASY CPNISLESVH LPMLTVLKLH SCEGITSASM TWIANSPALE VLELDNCNLL TTVSLHLSRL QSISLVHCRK
501: FTDLNLQSIM LSSITVSNCP ALRRITITSN ALRRLALQKQ ENLTTLVLQC HSLQEVDLSD CESLSNSVCK IFSDDGGCPM LKSLILDNCE SLTAVRFCNS
601: SLASLSLVGC RAVTSLELKC PRIEQICLDG CDHLETAFFQ PVALRSLNLG ICPKLSVLNI EAPYMVSLEL KGCGVLSEAS IMCPLLTSLD ASFCSQLRDD
701: CLSATTASCP LIESLVLMSC PSIGSDGLSS LNGLPNLTVL DLSYTFLMNL EPVFKSCIQL KVLKLQACKY LTDSSLEPLY KEGALPALEE LDLSYGTLCQ
801: TAIDDLLACC THLTHLSLNG CVNMHDLDWG STSVHLFDYF GVYSSSDNTQ EPAETANRLL QNLNCVGCPN IRKVLIPPAA RFYHLSTLNL SLSVNLKEVD
901: LTCSNLVLLN LSNCCSLEVL KLGCPRLASL FLQSCNMDEA GVEAAISGCS SLETLDLRFC PKISSVSMSK FRTVCPSLKR VFSSPNLLQD
101: DCTMEEADHD SYHKRAKVYS GLAECRSVSG VSSDAGNSVS SVERTVSFGI ASSSRTDTDM FCQNFILNYN RKDGKKDDGD DNGSSDTEDF EVHIDLTDDL
201: LHMVFSFLNH VDLCRSAMVC RQWRVASAHE DFWRVLNFEN IRISMEQFEN MCSRYPNATE VNVYGAPAVN ALAMKAATTL RNLEVLTIGK GHISESFFQA
301: LGECNMLRSV TVSDAILGNG AQEIHLSHDR LRELKITKCR VMRLSIRCPQ LRSLSLKRSN MSQAMLNCPL LQLLDIASCH KLLDAAIRSA AISCPQLESL
401: DVSNCSCVSD ETLREIAQAC ANLHILNASY CPNISLESVH LPMLTVLKLH SCEGITSASM TWIANSPALE VLELDNCNLL TTVSLHLSRL QSISLVHCRK
501: FTDLNLQSIM LSSITVSNCP ALRRITITSN ALRRLALQKQ ENLTTLVLQC HSLQEVDLSD CESLSNSVCK IFSDDGGCPM LKSLILDNCE SLTAVRFCNS
601: SLASLSLVGC RAVTSLELKC PRIEQICLDG CDHLETAFFQ PVALRSLNLG ICPKLSVLNI EAPYMVSLEL KGCGVLSEAS IMCPLLTSLD ASFCSQLRDD
701: CLSATTASCP LIESLVLMSC PSIGSDGLSS LNGLPNLTVL DLSYTFLMNL EPVFKSCIQL KVLKLQACKY LTDSSLEPLY KEGALPALEE LDLSYGTLCQ
801: TAIDDLLACC THLTHLSLNG CVNMHDLDWG STSVHLFDYF GVYSSSDNTQ EPAETANRLL QNLNCVGCPN IRKVLIPPAA RFYHLSTLNL SLSVNLKEVD
901: LTCSNLVLLN LSNCCSLEVL KLGCPRLASL FLQSCNMDEA GVEAAISGCS SLETLDLRFC PKISSVSMSK FRTVCPSLKR VFSSPNLLQD
Arabidopsis Description
FBL15SLOMO [Source:UniProtKB/TrEMBL;Acc:A0A178V148]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.