Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0011g06410.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G33210.1 | VIT_01s0011g06410.t01 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH52245 | Soybean | nucleus | 63.98 | 71.0 |
| KRH15607 | Soybean | cytosol | 67.31 | 68.41 |
| Bra011427.1-P | Field mustard | cytosol | 45.51 | 68.33 |
| PGSC0003DMT400048411 | Potato | cytosol | 66.09 | 68.23 |
| KRH61576 | Soybean | nucleus | 61.76 | 68.08 |
| Solyc08g061820.2.1 | Tomato | cytosol | 66.6 | 67.28 |
| KRH05410 | Soybean | cytosol | 66.6 | 67.21 |
| Os10t0396400-01 | Rice | mitochondrion | 41.68 | 63.15 |
| CDX75339 | Canola | cytosol | 60.95 | 62.46 |
| CDY46126 | Canola | cytosol | 61.55 | 62.18 |
| Bra037014.1-P | Field mustard | nucleus | 61.86 | 62.17 |
| AT4G33210.1 | Thale cress | cytosol | 62.06 | 62.12 |
| CDX68956 | Canola | cytosol | 61.15 | 62.03 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, vacuole | 44.3 | 61.06 |
| CDY28286 | Canola | nucleus | 53.88 | 61.03 |
| Bra034552.1-P | Field mustard | nucleus | 51.87 | 60.33 |
| GSMUA_Achr7P11390_001 | Banana | cytosol | 52.98 | 59.39 |
| CDY28285 | Canola | cytosol | 53.28 | 59.19 |
| CDY45031 | Canola | cytosol | 52.88 | 58.88 |
| Bra034551.1-P | Field mustard | cytosol | 52.77 | 58.76 |
| CDY45032 | Canola | nucleus | 51.66 | 58.72 |
| OQU91850 | Sorghum | cytosol | 52.98 | 52.98 |
| TraesCS1B01G154100.1 | Wheat | cytosol | 52.88 | 51.57 |
| TraesCS1A01G136200.1 | Wheat | cytosol | 50.15 | 51.56 |
| TraesCS1D01G136800.4 | Wheat | cytosol | 52.77 | 51.48 |
| Zm00001d014232_P014 | Maize | cytosol | 50.25 | 47.34 |
| Zm00001d033037_P008 | Maize | cytosol | 49.45 | 46.49 |
Protein Annotations
| EntrezGene:100262977 | wikigene:100262977 | Gene3D:3.80.10.10 | MapMan:35.1 | ProteinID:CCB46608 | ProteinID:CCB46608.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | UniProt:F6H3S5 | EMBL:FN595231 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0010252 | GO:GO:1905393 | InterPro:IPR001810 |
| InterPro:IPR032675 | EntrezGene:LOC100262977 | wikigene:LOC100262977 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp | PFAM:PF12937 |
| PANTHER:PTHR44842 | SMART:SM00256 | SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF52058 | SUPFAM:SSF81383 |
| TIGR:TC58953 | UniParc:UPI0002109A7A | ArrayExpress:VIT_04s0008g01890 | EnsemblPlantsGene:VIT_04s0008g01890 | EnsemblPlants:VIT_04s0008g01890.t01 | RefSeq:XP_002279983 |
| RefSeq:XP_002279983.2 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4:+:1515227..1524527
Molecular Weight (calculated)
108804.0 Da
IEP (calculated)
4.684
GRAVY (calculated)
-0.017
Length
991 amino acids
Sequence
(BLAST)
(BLAST)
001: MREGMFGNEN DDESEGKELG FLLGGQMSDL EENEMVVGSG GGGGGGGGDQ WQLGVGGWRQ FDQFASTSGQ GIGDNSEAFF PEKCDRPEGS ERDDCDSDDR
101: DSWDVHHKRA KVHSYSQGCT YAITAMPLEA GNSSSSTDRD YNVSQSPIPF NNEILRLTSM SNDSDDENPL DSNDGRDEEG DGFSTSKMED LEVRMDLTDD
201: LLHMVFSFLD HINLCRAAIV CKQWRAGSSH EDFWRCLNFE NRNISEEQFE DMCRRYPNAT EVNIFGAPSI HSLVMTAMSS LRNLETLTLG KGTLGDTFFQ
301: ALADCYMLKR LLVNDATLGN GIQEIPIYHD RLHHLQITKC RVLRISVRCP QLETLSLKRS SMAHAVLNCP LLHDLDIGSC HKLTDAAIRS AATSCPLLES
401: LDMSNCSCVS DDTLREIALT CANLHILDAS YCPNISLESV RLSMLTVLKL HSCEGITSAS MAAISHSYML EVLELDNCSL LTSVSLELPR LQNIRLVHCR
501: KFVDLNLRSI MLSSMTVSNC PALHRINVTS NSLQKLVLQK QASLTTLALQ CQYLQEVDLT DCESLTNSIC DVFSDDGGCP MLKSLVLDNC ECLTAVGFRS
601: TSLVSLSLVG CRAITSLELV CPYLEQVHLD GCDHLERASF RPVGLRSLNL GICPKLSALH IEAPSMVQLE LKGCGGLSEA SINCPMLTSL DASFCSKLKD
701: DCLSATAASC PFIESLILMS CPSVGYEGLS SLRLLPHLTL LDLSYTFLMN LQPVFESCLQ LKVLKLQACK YLTDSSLEAL YKEGALPALC ELDLSYGALC
801: QSAIEELLAC CTHLTHVSLN GCLNMHDLNW GFSSGPISEL PSIYNTSSLS SHGDDHELIE QPNRLLQNLN CVGCQNIKKV LIPPMARCTH LSSLNLSLSA
901: NLKEVDVACY NLCFLNLSNC SSLEILKLEC PRLTSLFLQS CNITVEAVEA AISQCNMLET LDIRFCPKLS NASMKTLRAV CPSLKRIFSS L
101: DSWDVHHKRA KVHSYSQGCT YAITAMPLEA GNSSSSTDRD YNVSQSPIPF NNEILRLTSM SNDSDDENPL DSNDGRDEEG DGFSTSKMED LEVRMDLTDD
201: LLHMVFSFLD HINLCRAAIV CKQWRAGSSH EDFWRCLNFE NRNISEEQFE DMCRRYPNAT EVNIFGAPSI HSLVMTAMSS LRNLETLTLG KGTLGDTFFQ
301: ALADCYMLKR LLVNDATLGN GIQEIPIYHD RLHHLQITKC RVLRISVRCP QLETLSLKRS SMAHAVLNCP LLHDLDIGSC HKLTDAAIRS AATSCPLLES
401: LDMSNCSCVS DDTLREIALT CANLHILDAS YCPNISLESV RLSMLTVLKL HSCEGITSAS MAAISHSYML EVLELDNCSL LTSVSLELPR LQNIRLVHCR
501: KFVDLNLRSI MLSSMTVSNC PALHRINVTS NSLQKLVLQK QASLTTLALQ CQYLQEVDLT DCESLTNSIC DVFSDDGGCP MLKSLVLDNC ECLTAVGFRS
601: TSLVSLSLVG CRAITSLELV CPYLEQVHLD GCDHLERASF RPVGLRSLNL GICPKLSALH IEAPSMVQLE LKGCGGLSEA SINCPMLTSL DASFCSKLKD
701: DCLSATAASC PFIESLILMS CPSVGYEGLS SLRLLPHLTL LDLSYTFLMN LQPVFESCLQ LKVLKLQACK YLTDSSLEAL YKEGALPALC ELDLSYGALC
801: QSAIEELLAC CTHLTHVSLN GCLNMHDLNW GFSSGPISEL PSIYNTSSLS SHGDDHELIE QPNRLLQNLN CVGCQNIKKV LIPPMARCTH LSSLNLSLSA
901: NLKEVDVACY NLCFLNLSNC SSLEILKLEC PRLTSLFLQS CNITVEAVEA AISQCNMLET LDIRFCPKLS NASMKTLRAV CPSLKRIFSS L
001: MRIWCFSCFT DEDEDEEDDN GGRVKKQSLA TAMDNSNGDG DFVNFGENER APRVPRWRLR LCAEESEAAW AELDRFWTSE IPLNQLVQGE SSSNVVAEAE
101: DCTMEEADHD SYHKRAKVYS GLAECRSVSG VSSDAGNSVS SVERTVSFGI ASSSRTDTDM FCQNFILNYN RKDGKKDDGD DNGSSDTEDF EVHIDLTDDL
201: LHMVFSFLNH VDLCRSAMVC RQWRVASAHE DFWRVLNFEN IRISMEQFEN MCSRYPNATE VNVYGAPAVN ALAMKAATTL RNLEVLTIGK GHISESFFQA
301: LGECNMLRSV TVSDAILGNG AQEIHLSHDR LRELKITKCR VMRLSIRCPQ LRSLSLKRSN MSQAMLNCPL LQLLDIASCH KLLDAAIRSA AISCPQLESL
401: DVSNCSCVSD ETLREIAQAC ANLHILNASY CPNISLESVH LPMLTVLKLH SCEGITSASM TWIANSPALE VLELDNCNLL TTVSLHLSRL QSISLVHCRK
501: FTDLNLQSIM LSSITVSNCP ALRRITITSN ALRRLALQKQ ENLTTLVLQC HSLQEVDLSD CESLSNSVCK IFSDDGGCPM LKSLILDNCE SLTAVRFCNS
601: SLASLSLVGC RAVTSLELKC PRIEQICLDG CDHLETAFFQ PVALRSLNLG ICPKLSVLNI EAPYMVSLEL KGCGVLSEAS IMCPLLTSLD ASFCSQLRDD
701: CLSATTASCP LIESLVLMSC PSIGSDGLSS LNGLPNLTVL DLSYTFLMNL EPVFKSCIQL KVLKLQACKY LTDSSLEPLY KEGALPALEE LDLSYGTLCQ
801: TAIDDLLACC THLTHLSLNG CVNMHDLDWG STSVHLFDYF GVYSSSDNTQ EPAETANRLL QNLNCVGCPN IRKVLIPPAA RFYHLSTLNL SLSVNLKEVD
901: LTCSNLVLLN LSNCCSLEVL KLGCPRLASL FLQSCNMDEA GVEAAISGCS SLETLDLRFC PKISSVSMSK FRTVCPSLKR VFSSPNLLQD
101: DCTMEEADHD SYHKRAKVYS GLAECRSVSG VSSDAGNSVS SVERTVSFGI ASSSRTDTDM FCQNFILNYN RKDGKKDDGD DNGSSDTEDF EVHIDLTDDL
201: LHMVFSFLNH VDLCRSAMVC RQWRVASAHE DFWRVLNFEN IRISMEQFEN MCSRYPNATE VNVYGAPAVN ALAMKAATTL RNLEVLTIGK GHISESFFQA
301: LGECNMLRSV TVSDAILGNG AQEIHLSHDR LRELKITKCR VMRLSIRCPQ LRSLSLKRSN MSQAMLNCPL LQLLDIASCH KLLDAAIRSA AISCPQLESL
401: DVSNCSCVSD ETLREIAQAC ANLHILNASY CPNISLESVH LPMLTVLKLH SCEGITSASM TWIANSPALE VLELDNCNLL TTVSLHLSRL QSISLVHCRK
501: FTDLNLQSIM LSSITVSNCP ALRRITITSN ALRRLALQKQ ENLTTLVLQC HSLQEVDLSD CESLSNSVCK IFSDDGGCPM LKSLILDNCE SLTAVRFCNS
601: SLASLSLVGC RAVTSLELKC PRIEQICLDG CDHLETAFFQ PVALRSLNLG ICPKLSVLNI EAPYMVSLEL KGCGVLSEAS IMCPLLTSLD ASFCSQLRDD
701: CLSATTASCP LIESLVLMSC PSIGSDGLSS LNGLPNLTVL DLSYTFLMNL EPVFKSCIQL KVLKLQACKY LTDSSLEPLY KEGALPALEE LDLSYGTLCQ
801: TAIDDLLACC THLTHLSLNG CVNMHDLDWG STSVHLFDYF GVYSSSDNTQ EPAETANRLL QNLNCVGCPN IRKVLIPPAA RFYHLSTLNL SLSVNLKEVD
901: LTCSNLVLLN LSNCCSLEVL KLGCPRLASL FLQSCNMDEA GVEAAISGCS SLETLDLRFC PKISSVSMSK FRTVCPSLKR VFSSPNLLQD
Arabidopsis Description
FBL15SLOMO [Source:UniProtKB/TrEMBL;Acc:A0A178V148]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.