Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G33210.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT4G33210.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037014.1-P | Field mustard | nucleus | 98.27 | 97.77 |
| CDX75339 | Canola | cytosol | 86.24 | 87.49 |
| CDX68956 | Canola | cytosol | 86.24 | 86.59 |
| AT4G33210.1 | Thale cress | cytosol | 86.54 | 85.76 |
| CDY28286 | Canola | nucleus | 68.5 | 76.8 |
| CDY28285 | Canola | cytosol | 69.22 | 76.12 |
| CDY45032 | Canola | nucleus | 66.87 | 75.23 |
| CDY45031 | Canola | cytosol | 67.69 | 74.61 |
| KRH52245 | Soybean | nucleus | 59.53 | 65.4 |
| KRH61576 | Soybean | nucleus | 56.57 | 61.74 |
| VIT_04s0008g01890.t01 | Wine grape | nucleus | 62.18 | 61.55 |
| Solyc08g061820.2.1 | Tomato | cytosol | 61.16 | 61.16 |
| PGSC0003DMT400048411 | Potato | cytosol | 59.84 | 61.15 |
| KRH15607 | Soybean | cytosol | 60.75 | 61.13 |
| KRH05410 | Soybean | cytosol | 60.65 | 60.59 |
| Os10t0396400-01 | Rice | mitochondrion | 40.27 | 60.4 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, vacuole | 39.76 | 54.24 |
| GSMUA_Achr7P11390_001 | Banana | cytosol | 47.91 | 53.17 |
| OQU91850 | Sorghum | cytosol | 50.97 | 50.45 |
| TraesCS1B01G154100.1 | Wheat | cytosol | 51.27 | 49.51 |
| TraesCS1D01G136800.4 | Wheat | cytosol | 51.17 | 49.41 |
| TraesCS1A01G136200.1 | Wheat | cytosol | 48.42 | 49.27 |
| Zm00001d014232_P014 | Maize | cytosol | 48.52 | 45.25 |
| Zm00001d033037_P008 | Maize | cytosol | 46.59 | 43.36 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | UniProt:A0A078I8F6 | EnsemblPlants:CDY46126 | ProteinID:CDY46126 | ProteinID:CDY46126.1 |
| ncoils:Coil | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSBRNA2T00083289001 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp | PFAM:PF12937 |
| PFscan:PS50181 | PANTHER:PTHR44842 | SMART:SM00256 | SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF52058 |
| SUPFAM:SSF81383 | UniParc:UPI0004EE128E | SEG:seg | : | : | : |
Description
BnaA03g52420DBnaA03g52420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8F6]
Coordinates
chrLK032650:+:150423..155251
Molecular Weight (calculated)
108063.0 Da
IEP (calculated)
4.595
GRAVY (calculated)
0.042
Length
981 amino acids
Sequence
(BLAST)
(BLAST)
001: MRIWCFDCFT DEEEEGRLKQ SAMDNNNYDD VDLDLNEREL GVCEDERWPL CEEMMLATTE EDGAELEQLW SSEIRSHPHL LLQGESSNAA AAVGEDCTME
101: EADHDSYHKR AKVYSGLTEA RSASGVSSDA GSSVERTVSF GVASSSQTDA DMFCQNFILN YSRKDGKKDE GDDNGSSESE DFELHIDLTD DLLHMVFSFL
201: NHIDLCRSAM VCRQWRVASS HEDFWKALNF ENIRISIEQF EDMCLRYPNA TEVNVYGTPS VNALAMKAAT TLRNLEVLTV GKGHISENFF QALGECNMLR
301: SVTVNEAILG NGAQEIHLSH DRLRELKITK CRVMRLSIRC PQLRSLSLKR SNMSQAMLNC PLLQLLDIAS CHKLLDAAIR SAAISCPQLE SLDVSNCSCV
401: SDETLREIAQ ACAGLHILNA SYCPNISLES VHLPMLTVLK LHSCEGITSA SMTWIANSPA LEVLELDNCN LLTSVVLHLS HLQSISLVHC RKFTELNLQS
501: VMLSSITVSN CPALRRITIT SNSLRRLALQ KQENLTTLVL QCQSLQEVDL SDCESLSNAV CEIFSDDGGC PMLKSLILDN CESLTEVRFR NSSLGSLSLV
601: GCRAVTSLEL KCPRIEQICL DGCDHLETAF FQPVALRSLN LGICPKLSVL NIEAPYMVSL ELKGCGVLSE ASIICPLLTS LDASFCGQLR DDFLSATTAS
701: CPLIESLVLM SCPSIGSDGL SSLNGLPNLT VLDLSYTFLM NLEPVFKSCI RLKVLKLQAC KYLTDTSLEP LYKESALPAL EELDLSYGTL CQTAIDDLLA
801: CCTHLTHLSL NGCVNMHDLD WGSTNVQPFD YFGVYSSGEI TQEPAEAGNR LLQNLNCVGC PNIRKVFIPP AARFYHLSTL NLSLSVNLKE VDLACSNLVL
901: LNLSNCCSLE VLKLGCPRLA SLFLQSCNMD EAGVEAAISR CCSLETLDLR FCSKISSVSM ARFRAVCPSL KRVFSSPNLA D
101: EADHDSYHKR AKVYSGLTEA RSASGVSSDA GSSVERTVSF GVASSSQTDA DMFCQNFILN YSRKDGKKDE GDDNGSSESE DFELHIDLTD DLLHMVFSFL
201: NHIDLCRSAM VCRQWRVASS HEDFWKALNF ENIRISIEQF EDMCLRYPNA TEVNVYGTPS VNALAMKAAT TLRNLEVLTV GKGHISENFF QALGECNMLR
301: SVTVNEAILG NGAQEIHLSH DRLRELKITK CRVMRLSIRC PQLRSLSLKR SNMSQAMLNC PLLQLLDIAS CHKLLDAAIR SAAISCPQLE SLDVSNCSCV
401: SDETLREIAQ ACAGLHILNA SYCPNISLES VHLPMLTVLK LHSCEGITSA SMTWIANSPA LEVLELDNCN LLTSVVLHLS HLQSISLVHC RKFTELNLQS
501: VMLSSITVSN CPALRRITIT SNSLRRLALQ KQENLTTLVL QCQSLQEVDL SDCESLSNAV CEIFSDDGGC PMLKSLILDN CESLTEVRFR NSSLGSLSLV
601: GCRAVTSLEL KCPRIEQICL DGCDHLETAF FQPVALRSLN LGICPKLSVL NIEAPYMVSL ELKGCGVLSE ASIICPLLTS LDASFCGQLR DDFLSATTAS
701: CPLIESLVLM SCPSIGSDGL SSLNGLPNLT VLDLSYTFLM NLEPVFKSCI RLKVLKLQAC KYLTDTSLEP LYKESALPAL EELDLSYGTL CQTAIDDLLA
801: CCTHLTHLSL NGCVNMHDLD WGSTNVQPFD YFGVYSSGEI TQEPAEAGNR LLQNLNCVGC PNIRKVFIPP AARFYHLSTL NLSLSVNLKE VDLACSNLVL
901: LNLSNCCSLE VLKLGCPRLA SLFLQSCNMD EAGVEAAISR CCSLETLDLR FCSKISSVSM ARFRAVCPSL KRVFSSPNLA D
001: MRIWCFSCFT DEDEDEEDDN GGRVKKQSLA TAMDNSNGDG DFVNFGENER APRVPRWRLR LCAEESEAAW AELDRFWTSE IPLNQLVQGE SSSNVVAEAE
101: DCTMEEADHD SYHKRAKVYS GLAECRSVSG VSSDAGNSVS SVERTVSFGI ASSSRTDTDM FCQNFILNYN RKDGKKDDGD DNGSSDTEDF EVHIDLTDDL
201: LHMVFSFLNH VDLCRSAMVC RQWRVASAHE DFWRVLNFEN IRISMEQFEN MCSRYPNATE VNVYGAPAVN ALAMKAATTL RNLEVLTIGK GHISESFFQA
301: LGECNMLRSV TVSDAILGNG AQEIHLSHDR LRELKITKCR VMRLSIRCPQ LRSLSLKRSN MSQAMLNCPL LQLLDIASCH KLLDAAIRSA AISCPQLESL
401: DVSNCSCVSD ETLREIAQAC ANLHILNASY CPNISLESVH LPMLTVLKLH SCEGITSASM TWIANSPALE VLELDNCNLL TTVSLHLSRL QSISLVHCRK
501: FTDLNLQSIM LSSITVSNCP ALRRITITSN ALRRLALQKQ ENLTTLVLQC HSLQEVDLSD CESLSNSVCK IFSDDGGCPM LKSLILDNCE SLTAVRFCNS
601: SLASLSLVGC RAVTSLELKC PRIEQICLDG CDHLETAFFQ PVALRSLNLG ICPKLSVLNI EAPYMVSLEL KGCGVLSEAS IMCPLLTSLD ASFCSQLRDD
701: CLSATTASCP LIESLVLMSC PSIGSDGLSS LNGLPNLTVL DLSYTFLMNL EPVFKSCIQL KVLKLQACKY LTDSSLEPLY KEGALPALEE LDLSYGTLCQ
801: TAIDDLLACC THLTHLSLNG CVNMHDLDWG STSVHLFDYF GVYSSSDNTQ EPAETANRLL QNLNCVGCPN IRKVLIPPAA RFYHLSTLNL SLSVNLKEVD
901: LTCSNLVLLN LSNCCSLEVL KLGCPRLASL FLQSCNMDEA GVEAAISGCS SLETLDLRFC PKISSVSMSK FRTVCPSLKR VFSSPNLLQD
101: DCTMEEADHD SYHKRAKVYS GLAECRSVSG VSSDAGNSVS SVERTVSFGI ASSSRTDTDM FCQNFILNYN RKDGKKDDGD DNGSSDTEDF EVHIDLTDDL
201: LHMVFSFLNH VDLCRSAMVC RQWRVASAHE DFWRVLNFEN IRISMEQFEN MCSRYPNATE VNVYGAPAVN ALAMKAATTL RNLEVLTIGK GHISESFFQA
301: LGECNMLRSV TVSDAILGNG AQEIHLSHDR LRELKITKCR VMRLSIRCPQ LRSLSLKRSN MSQAMLNCPL LQLLDIASCH KLLDAAIRSA AISCPQLESL
401: DVSNCSCVSD ETLREIAQAC ANLHILNASY CPNISLESVH LPMLTVLKLH SCEGITSASM TWIANSPALE VLELDNCNLL TTVSLHLSRL QSISLVHCRK
501: FTDLNLQSIM LSSITVSNCP ALRRITITSN ALRRLALQKQ ENLTTLVLQC HSLQEVDLSD CESLSNSVCK IFSDDGGCPM LKSLILDNCE SLTAVRFCNS
601: SLASLSLVGC RAVTSLELKC PRIEQICLDG CDHLETAFFQ PVALRSLNLG ICPKLSVLNI EAPYMVSLEL KGCGVLSEAS IMCPLLTSLD ASFCSQLRDD
701: CLSATTASCP LIESLVLMSC PSIGSDGLSS LNGLPNLTVL DLSYTFLMNL EPVFKSCIQL KVLKLQACKY LTDSSLEPLY KEGALPALEE LDLSYGTLCQ
801: TAIDDLLACC THLTHLSLNG CVNMHDLDWG STSVHLFDYF GVYSSSDNTQ EPAETANRLL QNLNCVGCPN IRKVLIPPAA RFYHLSTLNL SLSVNLKEVD
901: LTCSNLVLLN LSNCCSLEVL KLGCPRLASL FLQSCNMDEA GVEAAISGCS SLETLDLRFC PKISSVSMSK FRTVCPSLKR VFSSPNLLQD
Arabidopsis Description
FBL15SLOMO [Source:UniProtKB/TrEMBL;Acc:A0A178V148]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.