Factsheet for Os10t0396400-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33210.1	Os10t0114400-01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, nucleus, vacuole	65.44	59.53
OQU91850	Sorghum	cytosol	87.46	57.72
TraesCS1B01G154100.1	Wheat	cytosol	84.25	54.23
TraesCS1D01G136800.4	Wheat	cytosol	84.1	54.13
GSMUA_Achr7P11390_001	Banana	cytosol	71.71	53.05
TraesCS1A01G136200.1	Wheat	cytosol	76.91	52.18
Zm00001d014232_P014	Maize	cytosol	80.73	50.19
Zm00001d033037_P008	Maize	cytosol	78.9	48.96
KRH52245	Soybean	nucleus	62.23	45.58
Bra011427.1-P	Field mustard	cytosol	44.34	43.94
KRH61576	Soybean	nucleus	59.79	43.49
KRH05410	Soybean	cytosol	64.53	42.97
PGSC0003DMT400048411	Potato	cytosol	62.69	42.71
Bra034552.1-P	Field mustard	nucleus	55.5	42.61
KRH15607	Soybean	cytosol	63.46	42.56
Solyc08g061820.2.1	Tomato	cytosol	62.69	41.79
CDY28286	Canola	nucleus	55.81	41.71
VIT_04s0008g01890.t01	Wine grape	nucleus	63.15	41.68
CDY45032	Canola	nucleus	55.05	41.28
CDY45031	Canola	cytosol	55.2	40.56
Bra034551.1-P	Field mustard	cytosol	55.05	40.45
CDX75339	Canola	cytosol	59.79	40.43
AT4G33210.1	Thale cress	cytosol	61.01	40.3
CDY46126	Canola	cytosol	60.4	40.27
CDY28285	Canola	cytosol	54.89	40.25
Bra037014.1-P	Field mustard	nucleus	60.4	40.06
CDX68956	Canola	cytosol	59.33	39.71

Protein Annotations

EnsemblPlants:Os10t0396400-01	EnsemblPlantsGene:Os10g0396400	Gene3D:3.80.10.10	GO:GO:0008150	GO:GO:0009653	GO:GO:0010252
GO:GO:1905393	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44842	ProteinID:BAF26446.1
ProteinID:BAT10710.1	ProteinID:BAT10711.1	SEG:seg	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI0000DD9987
UniProt:Q0IXV2	MapMan:35.1	:	:	:	:

Description

F-box protein 552Leucine-rich repeat, cysteine-containing containing protein. (Os10t0396400-01);Hypothetical conserved gene. (Os10t0396400-02)

Coordinates

chr10:-:13294380..13300007

Molecular Weight (calculated)

71103.6 Da

IEP (calculated)

4.988

GRAVY (calculated)

0.261

Length

654 amino acids

Sequence
(BLAST)

001: SIYVVLSSRC SQLQILSLRR TGMAHVSLNC PQLVELDFQS CHKLSDNAIR QAATACPLLA SLDMSSCSCV TDETLREIAN SCPNLSVLDA SNCPNISFES
101: VRLPMLVDLR LLSCEGITSA SMAAIAYSRL LEALQLDNCS LLTSVSLDLP HLKNISLVHL RKFAELTLRS PVLSYIKVSR CSVLHRVSIT SNALQKLVLQ
201: KQESLSSLSL LCNNLIDVDL SDCESLTNAV CEVFSDGGGC PLLRSLILDN CESLSTVELN SSSMVNLSLA GCRSMTLLKL SCPNLQNVNL DGCDHLERAS
301: FCPVGLESLN LGICPKLSDL HIEAPKMSLL ELKGCGVLSQ ASINCPRLTS LDASFCRKLM DDSLSQTAEA CPLIENLILS SCVSIDLNGL SSLHCLHKLA
401: LLDLSYTFLT NLKPVFDSCP QLKILKLSAC KYLSDSSLDA LYREGALPML VELDLSYSSI GQTAIEELLS CCTNLVNVNL NGCTNLHQLV CGSDDCSSGD
501: MPVDVCPPDS APVRSEEISE RSDRLLEVLN CTGCPNIKKV IIPSMTTYLR LSKINLNLST NLKEVDLTCS NLYTLNLSNC SSLEVLKLDC PRLTNLQLLA
601: CTMLQDEELE SAISRCSALE ILNVHSCPKI NVLDFSRLRV VCPSLKRIQS SLIT

Best Arabidopsis Sequence Match ( AT4G33210.1 )
(BLAST)

001: MRIWCFSCFT DEDEDEEDDN GGRVKKQSLA TAMDNSNGDG DFVNFGENER APRVPRWRLR LCAEESEAAW AELDRFWTSE IPLNQLVQGE SSSNVVAEAE
101: DCTMEEADHD SYHKRAKVYS GLAECRSVSG VSSDAGNSVS SVERTVSFGI ASSSRTDTDM FCQNFILNYN RKDGKKDDGD DNGSSDTEDF EVHIDLTDDL
201: LHMVFSFLNH VDLCRSAMVC RQWRVASAHE DFWRVLNFEN IRISMEQFEN MCSRYPNATE VNVYGAPAVN ALAMKAATTL RNLEVLTIGK GHISESFFQA
301: LGECNMLRSV TVSDAILGNG AQEIHLSHDR LRELKITKCR VMRLSIRCPQ LRSLSLKRSN MSQAMLNCPL LQLLDIASCH KLLDAAIRSA AISCPQLESL
401: DVSNCSCVSD ETLREIAQAC ANLHILNASY CPNISLESVH LPMLTVLKLH SCEGITSASM TWIANSPALE VLELDNCNLL TTVSLHLSRL QSISLVHCRK
501: FTDLNLQSIM LSSITVSNCP ALRRITITSN ALRRLALQKQ ENLTTLVLQC HSLQEVDLSD CESLSNSVCK IFSDDGGCPM LKSLILDNCE SLTAVRFCNS
601: SLASLSLVGC RAVTSLELKC PRIEQICLDG CDHLETAFFQ PVALRSLNLG ICPKLSVLNI EAPYMVSLEL KGCGVLSEAS IMCPLLTSLD ASFCSQLRDD
701: CLSATTASCP LIESLVLMSC PSIGSDGLSS LNGLPNLTVL DLSYTFLMNL EPVFKSCIQL KVLKLQACKY LTDSSLEPLY KEGALPALEE LDLSYGTLCQ
801: TAIDDLLACC THLTHLSLNG CVNMHDLDWG STSVHLFDYF GVYSSSDNTQ EPAETANRLL QNLNCVGCPN IRKVLIPPAA RFYHLSTLNL SLSVNLKEVD
901: LTCSNLVLLN LSNCCSLEVL KLGCPRLASL FLQSCNMDEA GVEAAISGCS SLETLDLRFC PKISSVSMSK FRTVCPSLKR VFSSPNLLQD

Arabidopsis Description

FBL15SLOMO [Source:UniProtKB/TrEMBL;Acc:A0A178V148]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.