Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G33210.1 | KRH42483 | AT2G01950.1 | 19000166 |
| AT4G33210.1 | KRH58580 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH61576 | Soybean | nucleus | 89.36 | 88.77 |
| KRH15607 | Soybean | cytosol | 79.06 | 72.41 |
| KRH05410 | Soybean | cytosol | 77.72 | 70.67 |
| Bra011427.1-P | Field mustard | cytosol | 50.62 | 68.48 |
| VIT_04s0008g01890.t01 | Wine grape | nucleus | 71.0 | 63.98 |
| PGSC0003DMT400048411 | Potato | cytosol | 67.53 | 62.81 |
| Os10t0396400-01 | Rice | mitochondrion | 45.58 | 62.23 |
| Solyc08g061820.2.1 | Tomato | cytosol | 67.64 | 61.57 |
| CDX75339 | Canola | cytosol | 66.41 | 61.32 |
| CDX68956 | Canola | cytosol | 66.41 | 60.7 |
| CDY28286 | Canola | nucleus | 59.01 | 60.23 |
| Bra034552.1-P | Field mustard | nucleus | 57.0 | 59.74 |
| CDY46126 | Canola | cytosol | 65.4 | 59.53 |
| Bra037014.1-P | Field mustard | nucleus | 65.62 | 59.43 |
| AT4G33210.1 | Thale cress | cytosol | 65.85 | 59.39 |
| CDY45032 | Canola | nucleus | 57.0 | 58.37 |
| CDY28285 | Canola | cytosol | 58.23 | 58.3 |
| CDY45031 | Canola | cytosol | 57.45 | 57.64 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, vacuole | 46.36 | 57.58 |
| Bra034551.1-P | Field mustard | cytosol | 57.22 | 57.42 |
| GSMUA_Achr7P11390_001 | Banana | cytosol | 56.1 | 56.67 |
| OQU91850 | Sorghum | cytosol | 56.33 | 50.76 |
| TraesCS1B01G154100.1 | Wheat | cytosol | 55.66 | 48.92 |
| TraesCS1D01G136800.4 | Wheat | cytosol | 55.66 | 48.92 |
| TraesCS1A01G136200.1 | Wheat | cytosol | 52.52 | 48.65 |
| Zm00001d014232_P014 | Maize | cytosol | 53.86 | 45.72 |
| Zm00001d033037_P008 | Maize | cytosol | 51.96 | 44.02 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:100786178 | Gene3D:3.80.10.10 | MapMan:35.1 | EMBL:ACUP02003415 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | EnsemblPlantsGene:GLYMA_06G055800 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | UniProt:I1K8G1 |
| InterPro:IPR001810 | InterPro:IPR032675 | EnsemblPlants:KRH52245 | ProteinID:KRH52245 | ProteinID:KRH52245.1 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_Cys-con_subtyp | PFAM:PF12937 | PFscan:PS50181 | PANTHER:PTHR44842 | SMART:SM00256 | SMART:SM00367 |
| SUPFAM:SSF52047 | SUPFAM:SSF52058 | SUPFAM:SSF81383 | UniParc:UPI000233A5AF | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr6:+:4217856..4223836
Molecular Weight (calculated)
98155.4 Da
IEP (calculated)
4.926
GRAVY (calculated)
0.084
Length
893 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRVSPNRRR SDGESSSASA GDTRQKRARV YFDFDGTHCI VKCSNAGNSS ASVEEFVDYD NFQGSSLLRS NDDDAGEESN FDEGDGNDIS KVDDLEVKMD
101: LTDDLLHMVF SFLDHPNLCR AARVCKQWRT ASAHEDFWKS LNFEDRNISV EQFEDICRRY PNITAIRMSG PASNQLVMKA ISSLRNLEAL TLGKTHIMDN
201: FFHALADCSM LRRLSINDAI LGSGLQEISV NHDRLCHLQL TKCRVMRMTV RCPQLEIMSL KRSNMAQTVL NCPLLQELDI GSCHKLPDSA IRSAVTSCPQ
301: LVSLDMSNCS SVSDETLREI SQNCANLSFL DASYCPNISL ETVRLPMLTV LKLHSCEGIT SASMTAISHS YMLEVLELDN CSLLTSVSLD LPRLQNIRLV
401: HCRKFADLNL MTLMLSSILV SNCPVLHRIN ITSNSLQKLT IPKQDSLTTL ALQCQSLQEV DLSECESLNN SVCNVFNDGG GCPMLKSLVL DNCESLTSVQ
501: FISTSLISLS LGGCRAITNL ELTCPNLEKV ILDGCDHLER ASFCPVGLLS LNLGICPKLN TLSIEAPFMV SLELKGCGVL SEAFINCPLL TSLDASFCSQ
601: LTDGCLSATT VSCPLIESLI LMSCSSIGSD GLRSLYCLPN LIVLDLSYTF LVNLQPIFDS CLQLKVLKLQ ACKYLTDTSL EPLYKGGALP ALQELDLSYG
701: TLCQSAIDEL LAYCTNLTHV SLTGCVNMHD LNWGSSCGQS DNFPAVNTPS RASSNENIPE SSEQSTRLLQ NLNCVGCPNI RKVVIPLRAN CFHLLFLNLS
801: LSANLKEVDV TCLNLCFLNL SNCSSLEILK LECPKLTSLF LQSCNIDEEA VEAAISKCSI LETLDVRFCP KISSMSMGRL RTICSSLKRI FSS
101: LTDDLLHMVF SFLDHPNLCR AARVCKQWRT ASAHEDFWKS LNFEDRNISV EQFEDICRRY PNITAIRMSG PASNQLVMKA ISSLRNLEAL TLGKTHIMDN
201: FFHALADCSM LRRLSINDAI LGSGLQEISV NHDRLCHLQL TKCRVMRMTV RCPQLEIMSL KRSNMAQTVL NCPLLQELDI GSCHKLPDSA IRSAVTSCPQ
301: LVSLDMSNCS SVSDETLREI SQNCANLSFL DASYCPNISL ETVRLPMLTV LKLHSCEGIT SASMTAISHS YMLEVLELDN CSLLTSVSLD LPRLQNIRLV
401: HCRKFADLNL MTLMLSSILV SNCPVLHRIN ITSNSLQKLT IPKQDSLTTL ALQCQSLQEV DLSECESLNN SVCNVFNDGG GCPMLKSLVL DNCESLTSVQ
501: FISTSLISLS LGGCRAITNL ELTCPNLEKV ILDGCDHLER ASFCPVGLLS LNLGICPKLN TLSIEAPFMV SLELKGCGVL SEAFINCPLL TSLDASFCSQ
601: LTDGCLSATT VSCPLIESLI LMSCSSIGSD GLRSLYCLPN LIVLDLSYTF LVNLQPIFDS CLQLKVLKLQ ACKYLTDTSL EPLYKGGALP ALQELDLSYG
701: TLCQSAIDEL LAYCTNLTHV SLTGCVNMHD LNWGSSCGQS DNFPAVNTPS RASSNENIPE SSEQSTRLLQ NLNCVGCPNI RKVVIPLRAN CFHLLFLNLS
801: LSANLKEVDV TCLNLCFLNL SNCSSLEILK LECPKLTSLF LQSCNIDEEA VEAAISKCSI LETLDVRFCP KISSMSMGRL RTICSSLKRI FSS
001: MRIWCFSCFT DEDEDEEDDN GGRVKKQSLA TAMDNSNGDG DFVNFGENER APRVPRWRLR LCAEESEAAW AELDRFWTSE IPLNQLVQGE SSSNVVAEAE
101: DCTMEEADHD SYHKRAKVYS GLAECRSVSG VSSDAGNSVS SVERTVSFGI ASSSRTDTDM FCQNFILNYN RKDGKKDDGD DNGSSDTEDF EVHIDLTDDL
201: LHMVFSFLNH VDLCRSAMVC RQWRVASAHE DFWRVLNFEN IRISMEQFEN MCSRYPNATE VNVYGAPAVN ALAMKAATTL RNLEVLTIGK GHISESFFQA
301: LGECNMLRSV TVSDAILGNG AQEIHLSHDR LRELKITKCR VMRLSIRCPQ LRSLSLKRSN MSQAMLNCPL LQLLDIASCH KLLDAAIRSA AISCPQLESL
401: DVSNCSCVSD ETLREIAQAC ANLHILNASY CPNISLESVH LPMLTVLKLH SCEGITSASM TWIANSPALE VLELDNCNLL TTVSLHLSRL QSISLVHCRK
501: FTDLNLQSIM LSSITVSNCP ALRRITITSN ALRRLALQKQ ENLTTLVLQC HSLQEVDLSD CESLSNSVCK IFSDDGGCPM LKSLILDNCE SLTAVRFCNS
601: SLASLSLVGC RAVTSLELKC PRIEQICLDG CDHLETAFFQ PVALRSLNLG ICPKLSVLNI EAPYMVSLEL KGCGVLSEAS IMCPLLTSLD ASFCSQLRDD
701: CLSATTASCP LIESLVLMSC PSIGSDGLSS LNGLPNLTVL DLSYTFLMNL EPVFKSCIQL KVLKLQACKY LTDSSLEPLY KEGALPALEE LDLSYGTLCQ
801: TAIDDLLACC THLTHLSLNG CVNMHDLDWG STSVHLFDYF GVYSSSDNTQ EPAETANRLL QNLNCVGCPN IRKVLIPPAA RFYHLSTLNL SLSVNLKEVD
901: LTCSNLVLLN LSNCCSLEVL KLGCPRLASL FLQSCNMDEA GVEAAISGCS SLETLDLRFC PKISSVSMSK FRTVCPSLKR VFSSPNLLQD
101: DCTMEEADHD SYHKRAKVYS GLAECRSVSG VSSDAGNSVS SVERTVSFGI ASSSRTDTDM FCQNFILNYN RKDGKKDDGD DNGSSDTEDF EVHIDLTDDL
201: LHMVFSFLNH VDLCRSAMVC RQWRVASAHE DFWRVLNFEN IRISMEQFEN MCSRYPNATE VNVYGAPAVN ALAMKAATTL RNLEVLTIGK GHISESFFQA
301: LGECNMLRSV TVSDAILGNG AQEIHLSHDR LRELKITKCR VMRLSIRCPQ LRSLSLKRSN MSQAMLNCPL LQLLDIASCH KLLDAAIRSA AISCPQLESL
401: DVSNCSCVSD ETLREIAQAC ANLHILNASY CPNISLESVH LPMLTVLKLH SCEGITSASM TWIANSPALE VLELDNCNLL TTVSLHLSRL QSISLVHCRK
501: FTDLNLQSIM LSSITVSNCP ALRRITITSN ALRRLALQKQ ENLTTLVLQC HSLQEVDLSD CESLSNSVCK IFSDDGGCPM LKSLILDNCE SLTAVRFCNS
601: SLASLSLVGC RAVTSLELKC PRIEQICLDG CDHLETAFFQ PVALRSLNLG ICPKLSVLNI EAPYMVSLEL KGCGVLSEAS IMCPLLTSLD ASFCSQLRDD
701: CLSATTASCP LIESLVLMSC PSIGSDGLSS LNGLPNLTVL DLSYTFLMNL EPVFKSCIQL KVLKLQACKY LTDSSLEPLY KEGALPALEE LDLSYGTLCQ
801: TAIDDLLACC THLTHLSLNG CVNMHDLDWG STSVHLFDYF GVYSSSDNTQ EPAETANRLL QNLNCVGCPN IRKVLIPPAA RFYHLSTLNL SLSVNLKEVD
901: LTCSNLVLLN LSNCCSLEVL KLGCPRLASL FLQSCNMDEA GVEAAISGCS SLETLDLRFC PKISSVSMSK FRTVCPSLKR VFSSPNLLQD
Arabidopsis Description
FBL15SLOMO [Source:UniProtKB/TrEMBL;Acc:A0A178V148]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.