Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G33210.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT4G33210.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034552.1-P | Field mustard | nucleus | 94.84 | 97.07 |
| CDY28286 | Canola | nucleus | 91.86 | 91.54 |
| CDY28285 | Canola | cytosol | 79.36 | 77.58 |
| CDY45031 | Canola | cytosol | 76.26 | 74.72 |
| CDX75339 | Canola | cytosol | 76.61 | 69.08 |
| CDX68956 | Canola | cytosol | 76.72 | 68.47 |
| AT4G33210.1 | Thale cress | cytosol | 76.49 | 67.37 |
| CDY46126 | Canola | cytosol | 75.23 | 66.87 |
| KRH52245 | Soybean | nucleus | 58.37 | 57.0 |
| Os10t0396400-01 | Rice | mitochondrion | 41.28 | 55.05 |
| KRH61576 | Soybean | nucleus | 55.05 | 53.39 |
| PGSC0003DMT400048411 | Potato | cytosol | 58.03 | 52.71 |
| Solyc08g061820.2.1 | Tomato | cytosol | 58.26 | 51.78 |
| VIT_04s0008g01890.t01 | Wine grape | nucleus | 58.72 | 51.66 |
| KRH05410 | Soybean | cytosol | 58.03 | 51.53 |
| KRH15607 | Soybean | cytosol | 57.22 | 51.18 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, vacuole | 41.74 | 50.63 |
| GSMUA_Achr7P11390_001 | Banana | cytosol | 47.59 | 46.95 |
| OQU91850 | Sorghum | cytosol | 50.23 | 44.2 |
| TraesCS1D01G136800.4 | Wheat | cytosol | 50.92 | 43.7 |
| TraesCS1B01G154100.1 | Wheat | cytosol | 50.57 | 43.41 |
| TraesCS1A01G136200.1 | Wheat | cytosol | 47.36 | 42.84 |
| Zm00001d014232_P014 | Maize | cytosol | 48.74 | 40.4 |
| Zm00001d033037_P008 | Maize | cytosol | 45.87 | 37.95 |
Protein Annotations
| EnsemblPlants:CDY45032 | EnsemblPlantsGene:GSBRNA2T00081283001 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp |
| PANTHER:PTHR44842 | ProteinID:CDY45032 | ProteinID:CDY45032.1 | SEG:seg | SMART:SM00367 | SUPFAM:SSF52047 |
| SUPFAM:SSF52058 | UniParc:UPI0004EF4885 | UniProt:A0A078I4U4 | MapMan:35.1 | : | : |
Description
BnaA08g11870DBnaA08g11870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4U4]
Coordinates
chrLK032611:-:145785..153250
Molecular Weight (calculated)
95606.0 Da
IEP (calculated)
6.172
GRAVY (calculated)
0.142
Length
872 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEGELKRVW SSTDAEDDDT YHKRPKLECP ASASSDSSSM EERTVASSSR THTTDMFCQN FILNHGRKDD DSQVHFDLTA DLLHVVFSFL KHVDLCRSAM
101: VCLENMCHRY PNATRVNVYG VPAVNALAMK AATTLRNLET LTIGNGHISE NFFQILGECN SLRSVTISDA VLGSGPQETH LSHDRLHKLK IRQCSALRLS
201: IRCEQLRSLS LKRSNMVLAM LNCPLLQHLD IASCYKLQDA DIRSAVTSCP QLESLDVSNS SRLSNETLRE IAQACAALHI LNASYCPNIS FESVHLPMLT
301: VLKLRSCERI TSASMTGIAN SPALEVLELD NCNMLTSLAL HLSCLQSLIL LNCRKFVELN LQSTMLSSIT IANCPALRRV TITSNALRRL GLKKQENLTT
401: LVLHCQSLQE VDLSGCKSLS NTVCESFSDV GGCPLLKSLI LDNCESLTEV RFCNTSLSSL SLVGCRAVTS LALKCPRIEE ICLDGCYNLE TAFFKPVALR
501: SLNLEICPKL SVLSIEAPYM VSLDLKCFGG LSEASIICPL LTSLDASFCG QLRDDCLPAI TASCPLIESL VLMSCSSIAS DGFSSLKGLQ NLSVLDLSYT
601: CLMNLEPIFK SCIQLKVLKL QACKDLTDSS LEPLYKEGAL PALEELDLSY GTLCQTTIDN LLACCTHLTH LSLNGCVNMH DLEHDWGSGE SNQEPAETST
701: NRLLQNLSCV GCPNIRKVLI PPAARFNHLS SLNLSLCVNL TEVDLACSNL VLLNLSNCCS LEVLKLGCPR LSTLFLQSCK MDEAGVEAAI SGCGSLETLD
801: LRFCSKISSV SMVRFQTVCP SLKRVFSSPN LLQDHGFASN VLLYTTLSLD YTECYMICPK KICQLTHYVA TR
101: VCLENMCHRY PNATRVNVYG VPAVNALAMK AATTLRNLET LTIGNGHISE NFFQILGECN SLRSVTISDA VLGSGPQETH LSHDRLHKLK IRQCSALRLS
201: IRCEQLRSLS LKRSNMVLAM LNCPLLQHLD IASCYKLQDA DIRSAVTSCP QLESLDVSNS SRLSNETLRE IAQACAALHI LNASYCPNIS FESVHLPMLT
301: VLKLRSCERI TSASMTGIAN SPALEVLELD NCNMLTSLAL HLSCLQSLIL LNCRKFVELN LQSTMLSSIT IANCPALRRV TITSNALRRL GLKKQENLTT
401: LVLHCQSLQE VDLSGCKSLS NTVCESFSDV GGCPLLKSLI LDNCESLTEV RFCNTSLSSL SLVGCRAVTS LALKCPRIEE ICLDGCYNLE TAFFKPVALR
501: SLNLEICPKL SVLSIEAPYM VSLDLKCFGG LSEASIICPL LTSLDASFCG QLRDDCLPAI TASCPLIESL VLMSCSSIAS DGFSSLKGLQ NLSVLDLSYT
601: CLMNLEPIFK SCIQLKVLKL QACKDLTDSS LEPLYKEGAL PALEELDLSY GTLCQTTIDN LLACCTHLTH LSLNGCVNMH DLEHDWGSGE SNQEPAETST
701: NRLLQNLSCV GCPNIRKVLI PPAARFNHLS SLNLSLCVNL TEVDLACSNL VLLNLSNCCS LEVLKLGCPR LSTLFLQSCK MDEAGVEAAI SGCGSLETLD
801: LRFCSKISSV SMVRFQTVCP SLKRVFSSPN LLQDHGFASN VLLYTTLSLD YTECYMICPK KICQLTHYVA TR
001: MRIWCFSCFT DEDEDEEDDN GGRVKKQSLA TAMDNSNGDG DFVNFGENER APRVPRWRLR LCAEESEAAW AELDRFWTSE IPLNQLVQGE SSSNVVAEAE
101: DCTMEEADHD SYHKRAKVYS GLAECRSVSG VSSDAGNSVS SVERTVSFGI ASSSRTDTDM FCQNFILNYN RKDGKKDDGD DNGSSDTEDF EVHIDLTDDL
201: LHMVFSFLNH VDLCRSAMVC RQWRVASAHE DFWRVLNFEN IRISMEQFEN MCSRYPNATE VNVYGAPAVN ALAMKAATTL RNLEVLTIGK GHISESFFQA
301: LGECNMLRSV TVSDAILGNG AQEIHLSHDR LRELKITKCR VMRLSIRCPQ LRSLSLKRSN MSQAMLNCPL LQLLDIASCH KLLDAAIRSA AISCPQLESL
401: DVSNCSCVSD ETLREIAQAC ANLHILNASY CPNISLESVH LPMLTVLKLH SCEGITSASM TWIANSPALE VLELDNCNLL TTVSLHLSRL QSISLVHCRK
501: FTDLNLQSIM LSSITVSNCP ALRRITITSN ALRRLALQKQ ENLTTLVLQC HSLQEVDLSD CESLSNSVCK IFSDDGGCPM LKSLILDNCE SLTAVRFCNS
601: SLASLSLVGC RAVTSLELKC PRIEQICLDG CDHLETAFFQ PVALRSLNLG ICPKLSVLNI EAPYMVSLEL KGCGVLSEAS IMCPLLTSLD ASFCSQLRDD
701: CLSATTASCP LIESLVLMSC PSIGSDGLSS LNGLPNLTVL DLSYTFLMNL EPVFKSCIQL KVLKLQACKY LTDSSLEPLY KEGALPALEE LDLSYGTLCQ
801: TAIDDLLACC THLTHLSLNG CVNMHDLDWG STSVHLFDYF GVYSSSDNTQ EPAETANRLL QNLNCVGCPN IRKVLIPPAA RFYHLSTLNL SLSVNLKEVD
901: LTCSNLVLLN LSNCCSLEVL KLGCPRLASL FLQSCNMDEA GVEAAISGCS SLETLDLRFC PKISSVSMSK FRTVCPSLKR VFSSPNLLQD
101: DCTMEEADHD SYHKRAKVYS GLAECRSVSG VSSDAGNSVS SVERTVSFGI ASSSRTDTDM FCQNFILNYN RKDGKKDDGD DNGSSDTEDF EVHIDLTDDL
201: LHMVFSFLNH VDLCRSAMVC RQWRVASAHE DFWRVLNFEN IRISMEQFEN MCSRYPNATE VNVYGAPAVN ALAMKAATTL RNLEVLTIGK GHISESFFQA
301: LGECNMLRSV TVSDAILGNG AQEIHLSHDR LRELKITKCR VMRLSIRCPQ LRSLSLKRSN MSQAMLNCPL LQLLDIASCH KLLDAAIRSA AISCPQLESL
401: DVSNCSCVSD ETLREIAQAC ANLHILNASY CPNISLESVH LPMLTVLKLH SCEGITSASM TWIANSPALE VLELDNCNLL TTVSLHLSRL QSISLVHCRK
501: FTDLNLQSIM LSSITVSNCP ALRRITITSN ALRRLALQKQ ENLTTLVLQC HSLQEVDLSD CESLSNSVCK IFSDDGGCPM LKSLILDNCE SLTAVRFCNS
601: SLASLSLVGC RAVTSLELKC PRIEQICLDG CDHLETAFFQ PVALRSLNLG ICPKLSVLNI EAPYMVSLEL KGCGVLSEAS IMCPLLTSLD ASFCSQLRDD
701: CLSATTASCP LIESLVLMSC PSIGSDGLSS LNGLPNLTVL DLSYTFLMNL EPVFKSCIQL KVLKLQACKY LTDSSLEPLY KEGALPALEE LDLSYGTLCQ
801: TAIDDLLACC THLTHLSLNG CVNMHDLDWG STSVHLFDYF GVYSSSDNTQ EPAETANRLL QNLNCVGCPN IRKVLIPPAA RFYHLSTLNL SLSVNLKEVD
901: LTCSNLVLLN LSNCCSLEVL KLGCPRLASL FLQSCNMDEA GVEAAISGCS SLETLDLRFC PKISSVSMSK FRTVCPSLKR VFSSPNLLQD
Arabidopsis Description
FBL15SLOMO [Source:UniProtKB/TrEMBL;Acc:A0A178V148]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.