Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d000055_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G33210.1 | Zm00001d000055_P001 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU91850 | Sorghum | cytosol | 83.3 | 88.6 |
| Os10t0396400-01 | Rice | mitochondrion | 48.96 | 78.9 |
| Zm00001d014232_P014 | Maize | cytosol | 76.38 | 76.52 |
| TraesCS1B01G154100.1 | Wheat | cytosol | 68.41 | 70.96 |
| TraesCS1D01G136800.4 | Wheat | cytosol | 67.93 | 70.47 |
| TraesCS1A01G136200.1 | Wheat | cytosol | 63.57 | 69.5 |
| GSMUA_Achr7P11390_001 | Banana | cytosol | 50.47 | 60.18 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, vacuole | 40.32 | 59.11 |
| KRH52245 | Soybean | nucleus | 44.02 | 51.96 |
| Bra011427.1-P | Field mustard | cytosol | 31.97 | 51.06 |
| KRH61576 | Soybean | nucleus | 42.22 | 49.5 |
| VIT_04s0008g01890.t01 | Wine grape | nucleus | 46.49 | 49.45 |
| KRH15607 | Soybean | cytosol | 44.88 | 48.51 |
| CDY28286 | Canola | nucleus | 40.23 | 48.46 |
| PGSC0003DMT400048411 | Potato | cytosol | 44.02 | 48.33 |
| KRH05410 | Soybean | cytosol | 44.97 | 48.27 |
| Solyc08g061820.2.1 | Tomato | cytosol | 44.4 | 47.71 |
| Bra034552.1-P | Field mustard | nucleus | 38.42 | 47.54 |
| CDY45031 | Canola | cytosol | 39.94 | 47.3 |
| CDX75339 | Canola | cytosol | 43.26 | 47.16 |
| Bra034551.1-P | Field mustard | cytosol | 39.66 | 46.97 |
| CDY28285 | Canola | cytosol | 39.66 | 46.86 |
| CDY46126 | Canola | cytosol | 43.36 | 46.59 |
| AT4G33210.1 | Thale cress | cytosol | 43.64 | 46.46 |
| Bra037014.1-P | Field mustard | nucleus | 43.45 | 46.45 |
| CDX68956 | Canola | cytosol | 42.88 | 46.26 |
| CDY45032 | Canola | nucleus | 37.95 | 45.87 |
Protein Annotations
| Gene3D:1.10.10.1200 | Gene3D:1.20.1280.50 | MapMan:14.3.6.2.3 | Gene3D:3.80.10.10 | UniProt:A0A1D6KVV3 | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR002190 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp | InterPro:MHD_dom | ProteinID:ONM06636.1 | ProteinID:ONM06666.1 | PFAM:PF01454 |
| PFAM:PF12937 | PANTHER:PTHR44842 | SMART:SM00256 | SMART:SM00367 | SUPFAM:SSF52047 | UniParc:UPI000844B27F |
| EnsemblPlantsGene:Zm00001d033037 | EnsemblPlants:Zm00001d033037_P008 | EnsemblPlants:Zm00001d033037_T008 | SEG:seg | : | : |
Description
F-box/LRR-repeat protein 15
Coordinates
chr1:+:248197917..248213926
Molecular Weight (calculated)
115807.0 Da
IEP (calculated)
5.085
GRAVY (calculated)
0.002
Length
1054 amino acids
Sequence
(BLAST)
(BLAST)
0001: MADGGRMKGV QSAGGGAGDD EEGNEEVREE PELALSLGRR VWHLPPRQEA APRSLNWTPV LPEWNPDAAG SSQGVERALG GQSISSLGFH DMFGGILDDP
0101: QAGGSMEVGW GKLNEEDEDR DLQNKRLRVR HFGEENPLHS GASATPFGSE SSFLPISDEC VHLKLSRFPE HELEFGLSLF ANDGSESPRD ANNEQVDDAE
0201: NSGGRNSVDV GIRMDLSDDF LHMIFSFLDQ KDLCRAGVTC KQWRSASVHD DFWKCLKFEN TSVSLENFVN ICRHYQSVTE LNLHGVINAE TLVLEAIMFL
0301: RHLKTLTMGK GQLGESFFQA LAECPLLTAL TVNDASLGSG IQEVTVNHDG LRELHILKCR ALRISVRCSQ LQILSLRRTG MAHVSLNCPQ LLELDFQSCH
0401: KLSDNAIRQA ATACPLLAKL DMSSCSCVTD ETLQLIGLLC HLWQALQLDN CSLLTSVSLD LPHLKNISLV HLRKFADLNL RSPVLSYIKV SRCSALHRVS
0501: ITSTTLQKLV LQKQESLSSL SLQCHNLIDV DLTECESLTN AVCEVFSDGG GCPMLRSLIL DNCENLSIVE LNSSSLSCLS LAGCRSMTLL RLSCPNLQHV
0601: NLDGCDHLQS AAFCPEKDKL VADVMHYVLF RTHQNFDCPI KQEELTGIVT KNYRQRVLPT LVIKEAKDML AATFGYEMRE LQRSRALWSG FWTSWSEAAA
0701: PTKEVGLESL NLGICPKLSV LHIEAPNMSI LELKGCGVLS KASINCPRLT SLDASFCRQL VDDSLTCMSE ACPMIEHLIL SSCLSIGIDG LSSLHCLHKL
0801: TLLDLSYTFL DNLKPVFNSC LQLKVLKLSA CKYLSDSSLD ALYREGALPL LVELDLSYSS IGQNAIEDLL ACCTNLVNVN LNGCTNFQEL VCGSDDSSCV
0901: DMPVDFCAPS SAIKSEEISE RSGRLLEVLN CTGCPNIKKV VIPSIANFLH LSKINLNLST NLKEVDLTCP NLLTLNLSNC SSLEVLKLDC PRLSNLQLLA
1001: CIMLQEEELE SAISLCSALE FLNVHSCPKI NALDFGRLRL GCPSLKRIQS SLIS
0101: QAGGSMEVGW GKLNEEDEDR DLQNKRLRVR HFGEENPLHS GASATPFGSE SSFLPISDEC VHLKLSRFPE HELEFGLSLF ANDGSESPRD ANNEQVDDAE
0201: NSGGRNSVDV GIRMDLSDDF LHMIFSFLDQ KDLCRAGVTC KQWRSASVHD DFWKCLKFEN TSVSLENFVN ICRHYQSVTE LNLHGVINAE TLVLEAIMFL
0301: RHLKTLTMGK GQLGESFFQA LAECPLLTAL TVNDASLGSG IQEVTVNHDG LRELHILKCR ALRISVRCSQ LQILSLRRTG MAHVSLNCPQ LLELDFQSCH
0401: KLSDNAIRQA ATACPLLAKL DMSSCSCVTD ETLQLIGLLC HLWQALQLDN CSLLTSVSLD LPHLKNISLV HLRKFADLNL RSPVLSYIKV SRCSALHRVS
0501: ITSTTLQKLV LQKQESLSSL SLQCHNLIDV DLTECESLTN AVCEVFSDGG GCPMLRSLIL DNCENLSIVE LNSSSLSCLS LAGCRSMTLL RLSCPNLQHV
0601: NLDGCDHLQS AAFCPEKDKL VADVMHYVLF RTHQNFDCPI KQEELTGIVT KNYRQRVLPT LVIKEAKDML AATFGYEMRE LQRSRALWSG FWTSWSEAAA
0701: PTKEVGLESL NLGICPKLSV LHIEAPNMSI LELKGCGVLS KASINCPRLT SLDASFCRQL VDDSLTCMSE ACPMIEHLIL SSCLSIGIDG LSSLHCLHKL
0801: TLLDLSYTFL DNLKPVFNSC LQLKVLKLSA CKYLSDSSLD ALYREGALPL LVELDLSYSS IGQNAIEDLL ACCTNLVNVN LNGCTNFQEL VCGSDDSSCV
0901: DMPVDFCAPS SAIKSEEISE RSGRLLEVLN CTGCPNIKKV VIPSIANFLH LSKINLNLST NLKEVDLTCP NLLTLNLSNC SSLEVLKLDC PRLSNLQLLA
1001: CIMLQEEELE SAISLCSALE FLNVHSCPKI NALDFGRLRL GCPSLKRIQS SLIS
001: MADEEDSLSQ FDISKEETDK LVSEVIRFIL FKFHQSSGTP IKREDLTQIV TKNYRQRNLA THVINEAKKK LSNVFGYDLK ELQRARSSST GQSRLPQSQS
101: SVDSKSYVLV SELPLEVFKK HVVDETTSPV TGFTFVVLAI VQLAGGKIPE GMLLLGLLRR SFLWFRCNVL CKVVEWKSKV H
101: SVDSKSYVLV SELPLEVFKK HVVDETTSPV TGFTFVVLAI VQLAGGKIPE GMLLLGLLRR SFLWFRCNVL CKVVEWKSKV H
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: MAGE protein (InterPro:IPR002190); Has 1274 Blast hits to 1260 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 1104; Fungi - 45; Plants - 49; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). [Source:TAIR;Acc:AT1G34770]
SUBAcon: [peroxisome,plastid,cytosol]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.