CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33210.1	CDY03088	AT2G01950.1	19000166
AT4G33210.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034551.1-P	Field mustard	cytosol	98.09	98.09
CDY28285	Canola	cytosol	89.78	89.57
CDY28286	Canola	nucleus	76.52	77.83
CDY45032	Canola	nucleus	74.72	76.26
CDX75339	Canola	cytosol	76.74	70.63
CDX68956	Canola	cytosol	76.52	69.7
CDY46126	Canola	cytosol	74.61	67.69
AT4G33210.1	Thale cress	cytosol	75.17	67.58
KRH52245	Soybean	nucleus	57.64	57.45
Os10t0396400-01	Rice	mitochondrion	40.56	55.2
KRH61576	Soybean	nucleus	54.27	53.73
PGSC0003DMT400048411	Potato	cytosol	57.64	53.44
VIT_04s0008g01890.t01	Wine grape	nucleus	58.88	52.88
Solyc08g061820.2.1	Tomato	cytosol	57.87	52.5
KRH05410	Soybean	cytosol	57.53	52.14
KRH15607	Soybean	cytosol	56.97	52.0
GSMUA_Achr11P...	Banana	cytosol, nucleus, vacuole	41.01	50.76
GSMUA_Achr7P11390_001	Banana	cytosol	47.19	47.51
OQU91850	Sorghum	cytosol	51.12	45.91
TraesCS1B01G154100.1	Wheat	cytosol	52.25	45.77
TraesCS1D01G136800.4	Wheat	cytosol	52.02	45.57
TraesCS1A01G136200.1	Wheat	cytosol	49.1	45.33
Zm00001d014232_P014	Maize	cytosol	49.1	41.54
Zm00001d033037_P008	Maize	cytosol	47.3	39.94

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078I593	EnsemblPlants:CDY45031	ProteinID:CDY45031
ProteinID:CDY45031.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00081282001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44842
SMART:SM00256	SMART:SM00367	SUPFAM:SSF52058	SUPFAM:SSF81383	UniParc:UPI0004EDD688	SEG:seg

Description

BnaA08g11880DBnaA08g11880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I593]

Coordinates

chrLK032611:-:140816..145589

Molecular Weight (calculated)

97770.2 Da

IEP (calculated)

6.643

GRAVY (calculated)

0.184

Length

890 amino acids

Sequence
(BLAST)

001: MEEGEEAAGA ELKRLWSSNN AEDGTMEEED DSDHKRAKVH SALAECRSAS GISSDASGSS MERTVASSSR TDTTMFCQNF ILNHGRKDDD SQVHIDLTAD
101: LLHVVFSFLN SIDLCRSAMV CRQWRVASAH EDFWKVFNFQ NMRISIKQFE IMCHRYPNAT KVNLYGVPSY VSNSLAMRAA TTLRNLEVLI IGKGRLFEEI
201: LQVLRECNRL RSVTISEALL GTGPLETYLI HDRLRELKII KCRVMRLDIR CQQLRSLSLK GSNMALAMLH CPLLQHLDIA SCSKLLDVVI RSAVTSCPLL
301: ESLDVSKCSH ISNGTLGEIA QACAGLRRLN ASNCPSISFE LVHLPMLTVL KLRNCISITS ASMTWIANSP ALEVLELDNC NMLTSVALHL SFLRRLRLVN
401: CPKFTELNLQ STVLSSITIS KCPALCRVTI TSNALRRLAI KKQKNLTTLV LQCQSLQEVD LTGCKSLSNT AVFSDDGGCP MLKSLILDNC ESLTEVRFCN
501: STLSSLSLVG CRAVTSLALN CPRLEGICLD GCDHLETVFF KSVAVRSLNL GICPKLSVLT IEAPYMVSLD LKCFGGLSEA SIICPLLTSL DASFCGKLRD
601: DSLPAITASC PLIESLLLMA CSSIGSDGFS SLKGLQNLIV LDLSYTWVMN LEPIFKSCIQ LKVLKLQACK DLTDSSLEPL YKEGALPALE ELDLSYGTLC
701: RTVIADLLAC CTHLTHLNLN GCENMHDLDW GSTNVELSDY FGVYNSSENT QEESAETSNR LLQNLNCVGC PNIRKVLIPP AARFDHLSSL NLSLCVNLKE
801: VDLACSNLVL LNLSNCCSLE VLKLGCPRLS TLFLQSCKMD EAGVEAAISG CCSLQILDLR LCPKISSVSM ARFQTVCPSL KRVCSRVLIY

Best Arabidopsis Sequence Match ( AT4G33210.1 )
(BLAST)

001: MRIWCFSCFT DEDEDEEDDN GGRVKKQSLA TAMDNSNGDG DFVNFGENER APRVPRWRLR LCAEESEAAW AELDRFWTSE IPLNQLVQGE SSSNVVAEAE
101: DCTMEEADHD SYHKRAKVYS GLAECRSVSG VSSDAGNSVS SVERTVSFGI ASSSRTDTDM FCQNFILNYN RKDGKKDDGD DNGSSDTEDF EVHIDLTDDL
201: LHMVFSFLNH VDLCRSAMVC RQWRVASAHE DFWRVLNFEN IRISMEQFEN MCSRYPNATE VNVYGAPAVN ALAMKAATTL RNLEVLTIGK GHISESFFQA
301: LGECNMLRSV TVSDAILGNG AQEIHLSHDR LRELKITKCR VMRLSIRCPQ LRSLSLKRSN MSQAMLNCPL LQLLDIASCH KLLDAAIRSA AISCPQLESL
401: DVSNCSCVSD ETLREIAQAC ANLHILNASY CPNISLESVH LPMLTVLKLH SCEGITSASM TWIANSPALE VLELDNCNLL TTVSLHLSRL QSISLVHCRK
501: FTDLNLQSIM LSSITVSNCP ALRRITITSN ALRRLALQKQ ENLTTLVLQC HSLQEVDLSD CESLSNSVCK IFSDDGGCPM LKSLILDNCE SLTAVRFCNS
601: SLASLSLVGC RAVTSLELKC PRIEQICLDG CDHLETAFFQ PVALRSLNLG ICPKLSVLNI EAPYMVSLEL KGCGVLSEAS IMCPLLTSLD ASFCSQLRDD
701: CLSATTASCP LIESLVLMSC PSIGSDGLSS LNGLPNLTVL DLSYTFLMNL EPVFKSCIQL KVLKLQACKY LTDSSLEPLY KEGALPALEE LDLSYGTLCQ
801: TAIDDLLACC THLTHLSLNG CVNMHDLDWG STSVHLFDYF GVYSSSDNTQ EPAETANRLL QNLNCVGCPN IRKVLIPPAA RFYHLSTLNL SLSVNLKEVD
901: LTCSNLVLLN LSNCCSLEVL KLGCPRLASL FLQSCNMDEA GVEAAISGCS SLETLDLRFC PKISSVSMSK FRTVCPSLKR VFSSPNLLQD

Arabidopsis Description

FBL15SLOMO [Source:UniProtKB/TrEMBL;Acc:A0A178V148]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.