CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33210.1	CDY03088	AT2G01950.1	19000166
AT4G33210.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45031	Canola	cytosol	89.57	89.78
CDY28286	Canola	nucleus	79.71	81.26
CDY45032	Canola	nucleus	77.58	79.36
CDX75339	Canola	cytosol	78.03	71.98
CDX68956	Canola	cytosol	77.91	71.14
AT4G33210.1	Thale cress	cytosol	76.91	69.29
CDY46126	Canola	cytosol	76.12	69.22
KRH52245	Soybean	nucleus	58.3	58.23
Os10t0396400-01	Rice	mitochondrion	40.25	54.89
KRH61576	Soybean	nucleus	54.93	54.51
PGSC0003DMT400048411	Potato	cytosol	57.96	53.85
VIT_04s0008g01890.t01	Wine grape	nucleus	59.19	53.28
Solyc08g061820.2.1	Tomato	cytosol	58.3	53.01
KRH05410	Soybean	cytosol	58.18	52.85
KRH15607	Soybean	cytosol	57.4	52.51
GSMUA_Achr11P...	Banana	cytosol, nucleus, vacuole	40.58	50.35
GSMUA_Achr7P11390_001	Banana	cytosol	47.98	48.42
TraesCS1B01G154100.1	Wheat	cytosol	52.02	45.67
OQU91850	Sorghum	cytosol	50.67	45.61
TraesCS1D01G136800.4	Wheat	cytosol	51.91	45.57
TraesCS1A01G136200.1	Wheat	cytosol	48.77	45.12
Zm00001d014232_P014	Maize	cytosol	48.77	41.35
Zm00001d033037_P008	Maize	cytosol	46.86	39.66

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078GNZ4	EnsemblPlants:CDY28285	ProteinID:CDY28285	ProteinID:CDY28285.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00040028001
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PANTHER:PTHR44842
SMART:SM00256	SMART:SM00367	SUPFAM:SSF52058	SUPFAM:SSF81383	UniParc:UPI0004EEB600	SEG:seg

Description

BnaC03g66740DBnaC03g66740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNZ4]

Coordinates

chrLK032217:-:119894..124873

Molecular Weight (calculated)

97946.2 Da

IEP (calculated)

6.481

GRAVY (calculated)

0.170

Length

892 amino acids

Sequence
(BLAST)

001: MEEGEEAAGA ELKRCLWSSS NAEDCTMEEE DDSHHKRAKV CSALAECRSA SGISSDASGS SMEKTVASSS RTDTAMFCQN FILNHGRKDD DSQVHIDLTD
101: DDLLHVVFSF LNHIDLCRSA MVCRQWRVAS AHEDFWKVFN FQNMRISIKQ FEIMCHRYPN ATKVNVYGVP SVSNSLAMKA ATTLRNLEVL IIGKVHVSEE
201: IFQVLRECNS LRSVTISEAL LGTGPQEIHL SHDRLRELKI IKCRVMRLAI RCQQLRSLSL KGSNTVRAML HCPLLQHLDI ASCRKLLDVV IRSAVTSCPL
301: LESLDVSKCS NLSNGTLREI AQACAGLRML NASSCPSISF ESVHLPMLTV LKLHRCSCIT SVSMTWIANS PALEVLELDN CTMLTSVALH LSFLRSLSLV
401: NCPRFTELNL QSTMLSSITV SKCPALCRVT ITSNALRRLA IKKQENLTTL VLQCQSLQEV DLTGCKSLSN TVFSDDGGCP MLKSLILDNC ESLTEVRFCN
501: SSLSSLSLVG CRAVTSLALK CPRLEQICLD GCDNLETVFF KPVAVRSLNL GICPKLSVLS IEAPYMVSLD LKCFGGLSEA SIICPLLTSL DASFCGKLRD
601: DSLPTITASC PLIESLLLMS CSSIGSDGFS SLKGLQNLIV LDLSYTCVMN LEPIFKSCIQ LKVLKLHACK DLTDSSLEPL YKEGALPALE ELDLSYGTLC
701: QTTIDNLLAC CTHLTHLSLN GCVNMHDLDY FGVFNSSENT QESAETSNRL LQNLNCVGCP NIRKVLIPPA ARFDHLSSLN LSLSVHLEEV DLACSNLVKL
801: NLSNCCSLEV LKLGCPRLST LFLQSCKMDE AGVEAAISGC CSLEILDLRF CPKISSVSMA RFQTVCPSLK RVCSSPNLLK DQEFAWNVLY NL

Best Arabidopsis Sequence Match ( AT4G33210.1 )
(BLAST)

001: MRIWCFSCFT DEDEDEEDDN GGRVKKQSLA TAMDNSNGDG DFVNFGENER APRVPRWRLR LCAEESEAAW AELDRFWTSE IPLNQLVQGE SSSNVVAEAE
101: DCTMEEADHD SYHKRAKVYS GLAECRSVSG VSSDAGNSVS SVERTVSFGI ASSSRTDTDM FCQNFILNYN RKDGKKDDGD DNGSSDTEDF EVHIDLTDDL
201: LHMVFSFLNH VDLCRSAMVC RQWRVASAHE DFWRVLNFEN IRISMEQFEN MCSRYPNATE VNVYGAPAVN ALAMKAATTL RNLEVLTIGK GHISESFFQA
301: LGECNMLRSV TVSDAILGNG AQEIHLSHDR LRELKITKCR VMRLSIRCPQ LRSLSLKRSN MSQAMLNCPL LQLLDIASCH KLLDAAIRSA AISCPQLESL
401: DVSNCSCVSD ETLREIAQAC ANLHILNASY CPNISLESVH LPMLTVLKLH SCEGITSASM TWIANSPALE VLELDNCNLL TTVSLHLSRL QSISLVHCRK
501: FTDLNLQSIM LSSITVSNCP ALRRITITSN ALRRLALQKQ ENLTTLVLQC HSLQEVDLSD CESLSNSVCK IFSDDGGCPM LKSLILDNCE SLTAVRFCNS
601: SLASLSLVGC RAVTSLELKC PRIEQICLDG CDHLETAFFQ PVALRSLNLG ICPKLSVLNI EAPYMVSLEL KGCGVLSEAS IMCPLLTSLD ASFCSQLRDD
701: CLSATTASCP LIESLVLMSC PSIGSDGLSS LNGLPNLTVL DLSYTFLMNL EPVFKSCIQL KVLKLQACKY LTDSSLEPLY KEGALPALEE LDLSYGTLCQ
801: TAIDDLLACC THLTHLSLNG CVNMHDLDWG STSVHLFDYF GVYSSSDNTQ EPAETANRLL QNLNCVGCPN IRKVLIPPAA RFYHLSTLNL SLSVNLKEVD
901: LTCSNLVLLN LSNCCSLEVL KLGCPRLASL FLQSCNMDEA GVEAAISGCS SLETLDLRFC PKISSVSMSK FRTVCPSLKR VFSSPNLLQD

Arabidopsis Description

FBL15SLOMO [Source:UniProtKB/TrEMBL;Acc:A0A178V148]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.