Factsheet for GSMUA_Achr2P03940_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
plasma membrane 1
mitochondrion 3
nucleus 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P06820_001	Banana	mitochondrion	39.6	74.14
GSMUA_Achr1P06810_001	Banana	mitochondrion	67.89	74.05
GSMUA_Achr2P03920_001	Banana	mitochondrion	40.1	64.44
GSMUA_Achr2P03930_001	Banana	cytosol	39.27	63.78
GSMUA_Achr5P12260_001	Banana	mitochondrion	36.11	57.11
GSMUA_Achr4P05440_001	Banana	nucleus	40.77	56.19
GSMUA_Achr4P11970_001	Banana	golgi, nucleus, plasma membrane	48.59	55.41
TraesCS7D01G325300.1	Wheat	cytosol	28.12	53.65
Zm00001d045318_P001	Maize	cytosol	10.48	49.22
TraesCS2A01G369000.1	Wheat	golgi	37.27	48.59
TraesCS2D01G365700.1	Wheat	golgi	36.94	47.84
HORVU2Hr1G091800.9	Barley	cytosol	23.29	47.62
GSMUA_Achr7P06580_001	Banana	cytosol	23.46	45.05
Os04t0534000-01	Rice	mitochondrion	37.1	43.9
Zm00001d025933_P001	Maize	mitochondrion, plastid	36.11	42.72
EER87863	Sorghum	cytosol, peroxisome, vacuole	38.77	42.21
KXG26784	Sorghum	mitochondrion	34.94	41.42
TraesCS7A01G328500.1	Wheat	cytosol	38.77	41.17
TraesCS7D01G410200.1	Wheat	cytosol, extracellular, golgi	36.77	41.08
TraesCS7B01G317100.1	Wheat	endoplasmic reticulum	36.61	40.59
HORVU0Hr1G021480.1	Barley	cytosol, golgi, nucleus	37.94	40.35
TraesCS7B01G229100.2	Wheat	cytosol, endoplasmic reticulum, plastid	38.77	40.03
TraesCS7D01G325000.2	Wheat	cytosol	36.27	39.49
Os06t0152700-01	Rice	cytosol, endoplasmic reticulum, plastid	35.61	39.12
Os08t0101800-01	Rice	cytosol	36.44	37.82
EES13178	Sorghum	nucleus	37.27	37.71
TraesCS7A01G328300.1	Wheat	endoplasmic reticulum	26.62	37.3
Zm00001d052744_P001	Maize	cytosol	36.94	37.06

Protein Annotations

EnsemblPlants:GSMUA_Achr2P03940_001	EnsemblPlants:GSMUA_Achr2T03940_001	EnsemblPlantsGene:GSMUA_Achr2G03940_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LipoPS_modifying	ncoils:Coil	PANTHER:PTHR12203	PANTHER:PTHR12203:SF59	PFAM:PF05686	SEG:seg
SMART:SM00672	TMHMM:TMhelix	UniParc:UPI0002966477	UniProt:M0S4Y5	MapMan:35.2	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_50.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr2G03940_001]

Coordinates

chr2:+:9485807..9491039

Molecular Weight (calculated)

69046.3 Da

IEP (calculated)

8.938

GRAVY (calculated)

-0.453

Length

601 amino acids

Sequence
(BLAST)

001: MAMRANLRRL WHGSQPTHSS LESKGKSAPA SKHSPIKLVV AALVAILVIV FFISNSATFS WSEHGVHAES LKTQPSKAQA VPVTQPSKAQ TVPVTQPSKA
101: QAMPITLTCS NQTSPICKRS SNLVSALSLT TPQQSPTCPA YFRWIHEDLR PWKSTGITKE MVEGAQKLAT FRLVVLDGRV YVEEYFGQSM TRNVFTLWGI
201: LQLVNRYPGR VPDLDLMFNC VDQPSVRSAE YSSSTLPPVF HYCKDDQTSD ILFPDWSFWG WPETNIKPWV PLMNEMKAAN EEVKWIDREP FAFWKGNPTM
301: GSNRQELLKC NVTNEQDWNA RIYSQDWNRE EKQGFQQSNL AKQCSHRYRI YVDGLAWSVS QKYIMACNSP TLFVNTRWYE FFQRGLVPGH HYWPIPENNK
401: CRAIKFAVDW GNQHQEEAQA MGKASSNFLT EKVKMDYVYD YMLHVLTEYA KLLRYKPTVP EKATEFCLES MACTAQDNVK RFLLESMEKS THVSEPCTLP
501: PPFTSLELQQ LSQKTADAVK QVEMWEQKAW QNISDYIKNL FFIFSITENG NTFRRSCQHS LRRRNNGEKS AKVALQEKYA QNQPSSIYKV IKLENIIFLV
601: T

Best Arabidopsis Sequence Match ( AT5G23850.1 )
(BLAST)

001: MRNSPSKNGS AGGHSRTYTD TIWSPFVKSG LGISPNRSYA LVSLLILLIV GAFISTRLLL DTTVLLEKKA ATTTTTKTQT QTITPKYPRP TTVITQSPKP
101: EFTLHCSANE TTASCPSNKY PTTTSFEDDD TNHPPTATCP DYFRWIHEDL RPWSRTGITR EALERAKKTA TFRLAIVGGK IYVEKFQDAF QTRDVFTIWG
201: FLQLLRKYPG KIPDLELMFD CVDWPVVRAT EFAGANAPSP PPLFRYCGNE ETLDIVFPDW SFWGWAEVNI KPWESLLKEL REGNERTKWI NREPYAYWKG
301: NPMVAETRQD LMKCNVSEEH EWNARLYAQD WIKESKEGYK QSDLASQCHH RYKIYIEGSA WSVSEKYILA CDSVTLLVKP HYYDFFTRGL LPAHHYWPVR
401: EHDKCRSIKF AVDWGNSHIQ KAQDIGKAAS DFIQQDLKMD YVYDYMYHLL TEYSKLLQFK PEIPRNAVEI CSETMACLRS GNERKFMTES LVKQPADSGP
501: CAMPPPYDPA TYYEVVKRKQ STNMRILQWE MKYWSKQNQT GS

Arabidopsis Description

At5g23850 [Source:UniProtKB/TrEMBL;Acc:Q9FF95]
SUBAcon: [mitochondrion,endoplasmic reticulum,plastid,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.