CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
golgi 3
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05009	Soybean	golgi, mitochondrion	94.67	94.67
VIT_04s0008g02630.t01	Wine grape	golgi	64.72	65.22
KRH19073	Soybean	golgi	62.69	62.85
HORVU2Hr1G100480.3	Barley	cytosol	51.27	62.15
AT4G31350.4	Thale cress	golgi	58.38	61.17
Bra011262.1-P	Field mustard	golgi	57.87	60.64
CDX68738	Canola	golgi	57.87	60.64
CDY28259	Canola	golgi	57.87	60.64
Zm00001d024348_P002	Maize	mitochondrion	56.35	60.0
KRH02808	Soybean	golgi	63.2	59.29
KXG24737	Sorghum	golgi	57.61	59.27
Zm00001d026261_P001	Maize	golgi, mitochondrion	56.35	57.96
TraesCS2D01G428700.2	Wheat	mitochondrion	55.33	57.37
EES12818	Sorghum	golgi	56.35	57.36
Zm00001d002382_P002	Maize	golgi, mitochondrion	56.35	57.36
TraesCS2B01G452200.4	Wheat	mitochondrion	55.08	57.11
TraesCS2A01G430900.2	Wheat	mitochondrion	55.08	56.22
Os08t0225400-01	Rice	cytosol, golgi	56.6	54.0
KRH48972	Soybean	cytosol	23.1	42.72
KRH13326	Soybean	cytosol	22.59	41.78
KRH01729	Soybean	cytosol	30.96	40.53
KRH46947	Soybean	cytosol	30.96	40.53
KRH15500	Soybean	nucleus	36.29	37.63
KRH05512	Soybean	nucleus	36.29	37.53
KRH47176	Soybean	cytosol, golgi, plasma membrane	35.79	36.43
KRH44223	Soybean	cytosol, golgi, plasma membrane	35.79	36.43
KRH60391	Soybean	golgi, plastid	33.76	35.37
KRH41690	Soybean	golgi	32.99	34.95
KRH06031	Soybean	golgi, plasma membrane, plastid	33.76	33.76
KRH26270	Soybean	golgi	32.74	33.68
KRH35920	Soybean	golgi, plasma membrane	34.77	33.01
KRG90861	Soybean	golgi, plasma membrane	34.77	32.54
KRH56549	Soybean	golgi	29.95	32.42
KRG93228	Soybean	golgi	29.7	31.62
KRH11480	Soybean	mitochondrion	29.95	31.3
KRH38159	Soybean	golgi	34.26	30.89
KRH48513	Soybean	golgi	33.5	29.53
KRH39163	Soybean	golgi	33.5	29.27
KRH36494	Soybean	mitochondrion	30.46	28.5

Protein Annotations

EMBL:ACUP02008778	EnsemblPlants:KRH16109	EnsemblPlantsGene:GLYMA_14G133000	EntrezGene:100788165	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0008375	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	InterPro:Glyco_trans_14
PANTHER:PTHR31042	PANTHER:PTHR31042:SF1	PFAM:PF02485	ProteinID:KRH16109	ProteinID:KRH16109.1	ProteinID:KRH16110.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI000233BE0A	UniProt:K7M6J4	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr14:+:22807749..22816831

Molecular Weight (calculated)

45604.0 Da

IEP (calculated)

9.214

GRAVY (calculated)

-0.214

Length

394 amino acids

Sequence
(BLAST)

001: MKKERAWPQF IRNLLIMVGS RSRPQLRRPT WIIVLLSIVC VFLIAAYVYP PPSPSSCSVF SSHGCGSSAF ELPPAAHTRE LTDAEVQSRV VINEILNYYP
101: VQTKKPKVAF LFLTPGSLPF EKLWHMFFQG HEGKFSVYVH SSKEKPIHVS PFFVGRDIHS EPVGWGKISM VEAERRLLAH ALLDPDNQHF VLLSESCIPV
201: RRFEFVYNYL LLTNVSFIDS YVDPGPHGNG RYIEHMLPEV EKKDFRKGSQ WFSMKRQHAI IVMADSLYFT KFKHHCRPNM EGNRNCYADE HYLPTFFTML
301: DPGGIANWSI TYVDWSEGKW HPRSFRARDI TYQVMKNIAY IDESPHFTSD AKRTVVITPC VLNGSKRSCY LFARKFFPEA QDKLIQLYSN STIF

Best Arabidopsis Sequence Match ( AT2G19160.1 )
(BLAST)

001: MKAIKGWRLG KINYMQSLPG ARHRAPTRKP IWIIAVLSLI AMFVIGAYMF PHHSKAACYM FSSKGCKGLT DWLPPSLREY SDDEIAARVV ISEILSSPRV
101: IKKSSKIAFM FLTPGTLPFE KLWDLFFQGH EGKFSVYIHA SKDTPVHTSR YFLNREIRSD EVVWGRISMI DAERRLLTNA LRDPENQQFV LLSDSCVPLR
201: SFEYMYNYMM HSNVSYVDCF DDPGPHGTGR HMDHMLPEIP REDFRKGAQW FSMKRQHAVV TVADNLYYSK FRDYCGPGVE GNKNCIADEH YLPTFFYMLD
301: PTGIANWTVT YVDWSERKWH PRKYMPEDIT LELIKNISSI DAVSRVTSEK NGVVSWTHCM WNGIKRPCYL FGRKFHADTL DKLMELFPNY TSIV

Arabidopsis Description

At2g19160 [Source:UniProtKB/TrEMBL;Acc:Q8W460]
SUBAcon: [mitochondrion,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.