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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, vacuole

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 5
  • golgi 5
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, vacuole
Any Predictor:plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:vacuole
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d030361_P001 Maize plasma membrane 86.18 92.57
TraesCS1A01G055900.1 Wheat extracellular 53.0 79.58
TraesCS1B01G072500.1 Wheat extracellular, vacuole 73.96 79.06
Os10t0160100-01 Rice extracellular, vacuole 76.27 78.81
TraesCS1D01G056500.1 Wheat extracellular, vacuole 73.27 78.52
HORVU1Hr1G010910.2 Barley extracellular, vacuole 72.58 76.46
TraesCS1A01G049800.1 Wheat extracellular, vacuole 71.2 76.11
TraesCS1B01G072600.1 Wheat endoplasmic reticulum, extracellular, vacuole 66.59 71.71
HORVU1Hr1G011210.1 Barley vacuole 70.74 71.4
GSMUA_Achr11P... Banana extracellular, plasma membrane, vacuole 50.23 55.05
KXG19201 Sorghum plastid 52.3 48.92
VIT_02s0025g02770.t01 Wine grape extracellular 43.32 46.42
PGSC0003DMT400031570 Potato extracellular, vacuole 43.09 44.95
EES01795 Sorghum extracellular, plasma membrane, vacuole 42.17 44.85
Solyc08g083310.2.1 Tomato nucleus 43.55 44.68
KRH34248 Soybean extracellular, plasma membrane, vacuole 42.4 44.44
EES18301 Sorghum golgi, plasma membrane, vacuole 41.24 43.66
Solyc12g055840.1.1 Tomato nucleus 41.94 43.13
PGSC0003DMT400012898 Potato cytosol 40.78 43.07
AT5G42100.1 Thale cress extracellular, vacuole 41.94 42.82
CDX93815 Canola extracellular 40.78 42.75
Bra023293.1-P Field mustard extracellular 40.55 42.51
CDY13362 Canola extracellular, vacuole 40.55 42.51
EER88444 Sorghum extracellular, vacuole 39.86 42.4
EES10741 Sorghum golgi, plasma membrane, vacuole 39.86 42.2
CDY69080 Canola extracellular 40.55 42.11
CDX67530 Canola extracellular 40.78 41.45
AT1G32860.1 Thale cress extracellular, plasma membrane, vacuole 40.55 41.31
Bra028526.1-P Field mustard extracellular, vacuole 40.78 41.16
EES05179 Sorghum plastid 38.71 41.08
EER88625 Sorghum extracellular, plasma membrane, vacuole 34.1 37.76
KXG29738 Sorghum golgi, mitochondrion, vacuole 35.48 36.67
EES07606 Sorghum extracellular, vacuole 40.09 35.44
EER93548 Sorghum vacuole 35.25 34.38
EES13119 Sorghum extracellular, vacuole 35.71 33.41
KXG37872 Sorghum endoplasmic reticulum, extracellular, vacuole 35.02 32.0
EES10308 Sorghum endoplasmic reticulum, extracellular, vacuole 34.33 31.91
EER99488 Sorghum extracellular, vacuole 35.94 31.2
EER95211 Sorghum extracellular, vacuole 30.88 31.02
EER90524 Sorghum extracellular 34.33 30.85
EES14212 Sorghum extracellular 33.87 30.37
EES01451 Sorghum extracellular, plasma membrane, vacuole 34.1 29.78
KXG34744 Sorghum vacuole 33.18 28.46
EER99139 Sorghum endoplasmic reticulum, plasma membrane 30.65 27.54
EER95256 Sorghum extracellular, plasma membrane, vacuole 31.57 27.29
OQU90151 Sorghum vacuole 29.72 26.11
OQU92921 Sorghum mitochondrion 64.06 25.41
EER99489 Sorghum extracellular, vacuole 33.64 25.13
KXG36404 Sorghum vacuole 32.72 25.04
KXG36295 Sorghum plasma membrane 31.11 24.95
EER99491 Sorghum extracellular, vacuole 34.56 22.69
Protein Annotations
KEGG:00500+3.2.1.39Gene3D:3.20.20.80MapMan:50.3.2UniProt:A0A1B6QL85GO:GO:0003674GO:GO:0003824
GO:GO:0004553GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0016787InterPro:Glyco_hydro_17
InterPro:Glycoside_hydrolase_SFEnsemblPlants:KXG38664ProteinID:KXG38664ProteinID:KXG38664.1PFAM:PF00332PANTHER:PTHR32227
PANTHER:PTHR32227:SF219EnsemblPlantsGene:SORBI_3001G263500SUPFAM:SSF51445SignalP:SignalP-noTMUniParc:UPI00081ABCFESEG:seg
Description
hypothetical protein
Coordinates
chr1:-:48286565..48289205
Molecular Weight (calculated)
45127.8 Da
IEP (calculated)
6.505
GRAVY (calculated)
0.191
Length
434 amino acids
Sequence
(BLAST)
001: MAASVLCLCL SVSTLPSRAM ATLHLLLALL LLLPSISEAT SSALLGISYG RVGNNLPAAT SVPQIVASLG IGRVRLYDAD PTTIRAFANT GVELVVGVPD
101: ECLATVSTPN GAASWVGSNI APALPATKIA FLTVGNEVLT GVNSSSLSRY LLPAMQCLHD ALAQAGLDKQ VAVTTAHNLG VLATSYPPSS AYFRKDLLPM
201: LCPILDFHAH AGSPFLVNAY PYFAYAEEPT GVELEYALLE PGHAGVADPG TGLHYTNMLA AQVDAVYHAI AAANSAAARA VEVRVSETGW PSAGDANETG
301: ATPQNAARYN GNVMRLVAQG KGTPMRPAAP LRVYMFALFN ENMKPGPTSE RSYGLFKPDG TPAYELSYRL PQDNTTTSSS GGSVTGGGGY HGHGYGSDNA
401: GYYSISAAAK ATLGWWTWPQ VAVAARVAVL AMPL
Best Arabidopsis Sequence Match ( AT5G42100.2 )
(BLAST)
001: MASSSLQSLF SLFCLALFSL PLIVSSIGIN YGQVANNLPP PKNVIPLLKS VGATKVKLYD ADPQALRAFA GSGFELTVAL GNEYLAQMSD PIKAQGWVKE
101: NVQAYLPNTK IVAIVVGNEV LTSNQSALTA ALFPAMQSIH GALVDCGLNK QIFVTTAHSL AILDVSYPPS ATSFRRDLLG SLTPILDFHV KTGSPILINA
201: YPFFAYEENP KHVSLDFVLF QPNQGFTDPG SNFHYDNMLF AQVDAVYHAL DAVGISYKKV PIVVSETGWP SNGDPQEVGA TCDNARKYNG NLIKMMMSKK
301: MRTPIRPECD LTIFVFALFN ENMKPGPTSE RNYGLFNPDG TPVYSLGIKT SSTHSSGSGS SNSTGGSSSG GGGNTGGSSS GGGIYQPVTG NPSPDYMSIS
401: SAGVTFSTLH FICCFTLTIF VDI
Arabidopsis Description
ATBG_PPAPGlucan endo-1,3-beta-glucosidase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHX5]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.