CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028410_P001	Maize	vacuole	30.53	92.52
Os03t0246100-01	Rice	extracellular, vacuole	29.43	74.88
TraesCS4A01G067900.1	Wheat	vacuole	26.51	69.38
TraesCS4D01G225700.1	Wheat	vacuole	26.23	68.66
TraesCS4B01G225100.1	Wheat	vacuole	26.23	68.66
HORVU4Hr1G063240.7	Barley	golgi, vacuole	25.87	65.36
KXG38664	Sorghum	extracellular, vacuole	25.41	64.06
GSMUA_Achr11P...	Banana	extracellular, plasma membrane, vacuole	20.48	56.57
KXG19201	Sorghum	plastid	19.65	46.34
VIT_02s0025g02770.t01	Wine grape	extracellular	17.09	46.17
KRH34248	Soybean	extracellular, plasma membrane, vacuole	17.37	45.89
PGSC0003DMT400031570	Potato	extracellular, vacuole	17.37	45.67
Solyc08g083310.2.1	Tomato	nucleus	17.55	45.39
PGSC0003DMT400012898	Potato	cytosol	16.82	44.77
EES01795	Sorghum	extracellular, plasma membrane, vacuole	16.54	44.36
Solyc12g055840.1.1	Tomato	nucleus	17.09	44.31
EES18301	Sorghum	golgi, plasma membrane, vacuole	16.54	44.15
AT5G42100.1	Thale cress	extracellular, vacuole	17.0	43.76
EES10741	Sorghum	golgi, plasma membrane, vacuole	16.36	43.66
CDY13362	Canola	extracellular, vacuole	16.36	43.24
CDX93815	Canola	extracellular	16.18	42.75
Bra023293.1-P	Field mustard	extracellular	16.18	42.75
EES05179	Sorghum	plastid	15.81	42.3
CDX67530	Canola	extracellular	16.45	42.15
CDY69080	Canola	extracellular	16.09	42.11
Bra028526.1-P	Field mustard	extracellular, vacuole	16.54	42.09
EER88444	Sorghum	extracellular, vacuole	15.63	41.91
AT1G32860.1	Thale cress	extracellular, plasma membrane, vacuole	16.0	41.08
EER88625	Sorghum	extracellular, plasma membrane, vacuole	13.99	39.03
KXG29738	Sorghum	golgi, mitochondrion, vacuole	14.17	36.9
EES07606	Sorghum	extracellular, vacuole	16.09	35.85
EER99488	Sorghum	extracellular, vacuole	14.81	32.4
EER90524	Sorghum	extracellular	14.26	32.3
EES13119	Sorghum	extracellular, vacuole	13.53	31.9
KXG37872	Sorghum	endoplasmic reticulum, extracellular, vacuole	13.8	31.79
EER93548	Sorghum	vacuole	12.89	31.69
EES10308	Sorghum	endoplasmic reticulum, extracellular, vacuole	13.16	30.84
EER95211	Sorghum	extracellular, vacuole	12.07	30.56
EES14212	Sorghum	extracellular	13.44	30.37
EES01451	Sorghum	extracellular, plasma membrane, vacuole	13.71	30.18
EER99139	Sorghum	endoplasmic reticulum, plasma membrane	12.34	27.95
EER95256	Sorghum	extracellular, plasma membrane, vacuole	12.8	27.89
KXG34744	Sorghum	vacuole	12.43	26.88
EER99489	Sorghum	extracellular, vacuole	14.26	26.85
KXG36295	Sorghum	plasma membrane	13.16	26.62
KXG36404	Sorghum	vacuole	13.71	26.45
OQU90151	Sorghum	vacuole	11.43	25.3
EER99491	Sorghum	extracellular, vacuole	13.99	23.15

Protein Annotations

KEGG:00500+3.2.1.39	MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.20.20.80
Gene3D:3.30.260.10	Gene3D:3.50.7.10	UniProt:A0A1Z5SAH0	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0006457	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0042026
InterPro:GROEL-like_equatorial_sf	InterPro:Glyco_hydro_17	InterPro:Glycoside_hydrolase_SF	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	EnsemblPlants:OQU92921	ProteinID:OQU92921	ProteinID:OQU92921.1	PFAM:PF00118	PFAM:PF00332
PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF81	EnsemblPlantsGene:SORBI_3001G437801	SUPFAM:SSF48592
SUPFAM:SSF51445	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	TMHMM:TMhelix
UniParc:UPI000B8B99D4	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:71614120..71623083

Molecular Weight (calculated)

116009.0 Da

IEP (calculated)

7.827

GRAVY (calculated)

-0.014

Length

1094 amino acids

Sequence
(BLAST)

0001: MAPCCLLQIG RGLERARALR LAAALCAAVV ALALAPASDA TSASLLGINY GRVGNNLPPP QSVVPLLAGL GIGRVRMYDA DPTVLRAFAK TGVELIVGVP
0101: DECLAAVADP GGAAQWLKEN VVPFLQDTKI AVLAVGNEVL TGSNSSTLSR TLLPAMQSLH GAVAALGLDK QITVTTAHNL GVLGTSYPPS AGAFRKDLLP
0201: YLCPILDYHA RTGSPFLVNA YPYFAYSSDP RGVQLEYALL DPGFAGVQDP NSRLHYPNLL VAQVDAVYHA IAAANAAASR VVEVRISETG WPSAGAANET
0301: AATPQNAARY NSNAMRLVAD GKGTPLRPGA PLRAYVFALF NENLKPGLAS ERYYGLFNPD GTPAYQLSFK LPRDNSTFDH GGTGNGDGGF GGNGNGKANG
0401: SSVNISGGGN SGYYDISASA LDAPTRADIA IVATGKGDAG RPGASEIFQG RLFGATPRHG GISTLQSTHA FKPFALLRAL GSSQQQPYPL HSVFATAGSF
0501: QLGGRTMSRM APPSPPLSMK PPTLPFSPPK KPPPMPVYKD LHFNRDLSAT KKLQAGVDLV ARLLGVTLGP KGRNVVLGNK YGPPKIVNDG ETVLKEIELE
0601: DPLENLGVKL VRQAGARTND IAGDGCTTSI ILAQGLIAEG MKVLAAGINP VQVARGIEKT AAALVSELRL MSREIEDHEI AHVAAISAGN DYAVGNMIYD
0701: AFQRVGRKGM VRIENGRGTE NSLEVVEGMQ FERGYLSPYF VTNRGNMTVE FTDCLILLVD KKISDASEII RILDSAVKEN YPLLIIAEDV EEQAMADLIK
0801: NKLKGTIKVA AVKAFSFGEQ KTQCLDDIAI MTGGTLVRDD MGHELEMAGK EVLGFASKVV ITKDSTLIVT DGSNRQAVEE RVTMIKGQIE NSKERYNKKI
0901: LGERIARLCG AIAIIQVGAQ TIIEMKDKKL RIEDALNATR AAIEEGVVVG GGCSLLRLSE KIDAIKESSL DNIEQEVGAD IFKQALSYPT SLIANNAGVN
1001: GDFVIKKVLL NDNANYGYNA AKNCYEDLMA AGILDASKVV RCCIEHAAVV AKSFLTSDVV IVEAKEGKPI RIRPPMPPRN LIPPMPPSIS GIRV

Best Arabidopsis Sequence Match ( AT1G26230.1 )
(BLAST)

001: MAFSQAALSA LPLSDRTFRK KPSSSSSSSP NFVLRVRAAA KEVHFNRDGS VTKKLQAGAD MVAKLLGVTL GPKGRNVVLQ NKYGPPRIVN DGETVLKEIE
101: LEDPLENVGV KLVRQAGAKT NDLAGDGSTT SIILAHGLIT EGIKVISAGT NPIQVARGIE KTTKALVLEL KSMSREIEDH ELAHVAAVSA GNDYEVGNMI
201: SNAFQQVGRT GVVTIEKGKY LVNNLEIVEG MQFNRGYLSP YFVTDRRKRE AEFHDCKLLL VDKKITNPKD MFKILDSAVK EEFPVLIVAE DIEQDALAPV
301: IRNKLKGNLK VAAIKAPAFG ERKSHCLDDL AIFTGATVIR DEMGLSLEKA GKEVLGTAKR VLVTKDSTLI VTNGFTQKAV DERVSQIKNL IENTEENFQK
401: KILNERVARL SGGIAIIQVG ALTQVELKDK QLKVEDALNA TKSAIEEGIV VGGGCALLRL ATKVDRIKET LDNTEQKIGA EIFKKALSYP IRLIAKNADT
501: NGNIVIEKVL SNKNTMYGYN AAKNQYEDLM LAGIIDPTKV VRCCLEHASS VAQTFLTSDC VVVEIKEIKP RPIINPPLPT SSPATSSMFP DRKLPRFPQI
601: MPRTRSHFPR K

Arabidopsis Description

CPN60B4Cpn60beta4 [Source:UniProtKB/TrEMBL;Acc:A0A178WH16]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.