Factsheet for PGSC0003DMT400074993

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020938	Potato	cytosol	73.68	17.33
VIT_06s0004g02990.t01	Wine grape	cytosol	63.16	14.96
KRH22907	Soybean	cytosol	63.16	14.63
KRH26430	Soybean	cytosol	61.05	14.18
GSMUA_Achr1P05590_001	Banana	mitochondrion	55.79	13.66
KRH24883	Soybean	cytosol, plastid	56.84	13.2
KRH29938	Soybean	mitochondrion	58.95	13.02
AT5G60550.1	Thale cress	mitochondrion	55.79	13.02
CDY09195	Canola	mitochondrion	54.74	12.78
Bra020241.1-P	Field mustard	mitochondrion	54.74	12.78
AT3G45240.1	Thale cress	cytosol	51.58	12.37
CDY31536	Canola	cytosol	53.68	12.35
Bra002472.1-P	Field mustard	cytosol	53.68	12.35
CDX80157	Canola	cytosol	53.68	12.32
Os03t0711300-01	Rice	cytosol	46.32	10.33
Zm00001d025946_P003	Maize	cytosol	45.26	10.09
Zm00001d002827_P003	Maize	cytosol	44.21	10.0
KXG37739	Sorghum	cytosol	44.21	9.86
TraesCS4B01G046100.1	Wheat	cytosol	44.21	9.86
TraesCS1A01G443100.1	Wheat	cytosol, plasma membrane, plastid	42.11	9.71
TraesCS4A01G268200.1	Wheat	cytosol	43.16	9.62
TraesCS4D01G045900.1	Wheat	cytosol	43.16	9.62
TraesCS1D01G451100.1	Wheat	cytosol, plastid	42.11	9.52
TraesCS1B01G477300.1	Wheat	cytosol	41.05	9.22
HORVU4Hr1G007440.1	Barley	cytosol	42.11	8.95
OQU82027	Sorghum	cytosol	44.21	8.59
HORVU1Hr1G094990.20	Barley	cytosol, plastid	23.16	5.2

Protein Annotations

EnsemblPlants:PGSC0003DMT400074993	EnsemblPlantsGene:PGSC0003DMG402029166	Gene3D:1.10.510.10	InterPro:Kinase-like_dom_sf	PANTHER:PTHR44241	PANTHER:PTHR44241:SF2
PGSC:PGSC0003DMG402029166	SEG:seg	SUPFAM:SSF56112	UniParc:UPI000295A6A2	UniProt:M1CUG6	MapMan:35.1

Description

Calcium/calmodulin-dependent protein kinase kinase [Source:PGSC_GENE;Acc:PGSC0003DMG402029166]

Coordinates

chr6:+:10170543..10173019

Molecular Weight (calculated)

10945.2 Da

IEP (calculated)

4.601

GRAVY (calculated)

-0.469

Length

95 amino acids

Sequence
(BLAST)

1: MVLGKYPFLG DTLQDTYDKI VNNPNSLPDV MDPLLKNLLE GLLCKDPVQR MNLQSVCEHE WVVGDEGPIP RHLCWCQRQK MLKEVSDRNA EDTFT

Best Arabidopsis Sequence Match ( AT5G60550.1 )
(BLAST)

001: MFRDSFLFAR TIGCFGCFGS SGSRNQQSPK PYDDDTHSCD SDVTSTARGE EEEDEEEVEQ KSRSKRSEEI LKYRLDNGLI CRHIPVRETN ELIRGEDENG
101: DKTINEYVRV CKIGSGSYGK VVLYRSTLDG QYYAIKAFHK SHLLRLRVAP SETAMSDVLR EVMIMKILEH PNIVNLIEVI DDPETDHFYM VLEYVDGKWV
201: YDGSGPPGAL GEKTARKYLR DIVTGLMYLH AHDVIHGDIK PDNLLVTSSG TVKIGDFSVS QVFKDDDDQL RRSPGTPVFT APECCLVSGI TYSGRAADTW
301: AVGVTLYCMI LGQYPFLADT LQDTYDKIVN NPLIIPDGLN PLLRDLIEGL LCKDPSQRMT LKNVSEHPWV IGEDGHVPEY FCWCKRNAAS KIEEGEANGI
401: SETSDPN

Arabidopsis Description

GRIK2Serine/threonine-protein kinase GRIK2 [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ38]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.