Factsheet for TraesCS1B01G477300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G443100.1	Wheat	cytosol, plasma membrane, plastid	93.85	96.36
TraesCS1D01G451100.1	Wheat	cytosol, plastid	94.8	95.48
TraesCS4B01G046100.1	Wheat	cytosol	75.18	74.65
HORVU1Hr1G094990.20	Barley	cytosol, plastid	74.0	74.0
Os03t0711300-01	Rice	cytosol	74.23	73.71
Zm00001d025946_P003	Maize	cytosol	73.76	73.24
Zm00001d002827_P003	Maize	cytosol	72.34	72.86
KXG37739	Sorghum	cytosol	70.92	70.42
OQU82027	Sorghum	cytosol	74.47	64.42
Solyc11g069310.1.1	Tomato	cytosol	29.79	59.43
GSMUA_Achr1P05590_001	Banana	mitochondrion	53.66	58.51
VIT_06s0004g02990.t01	Wine grape	cytosol	53.66	56.61
PGSC0003DMT400020938	Potato	cytosol	52.01	54.46
KRH24883	Soybean	cytosol, plastid	51.77	53.55
KRH22907	Soybean	cytosol	51.54	53.17
KRH26430	Soybean	cytosol	51.3	53.06
AT5G60550.1	Thale cress	mitochondrion	50.35	52.33
AT3G45240.1	Thale cress	cytosol	48.46	51.77
CDY31536	Canola	cytosol	50.35	51.57
Bra002472.1-P	Field mustard	cytosol	50.35	51.57
CDX80157	Canola	cytosol	50.12	51.21
CDY09195	Canola	mitochondrion	48.94	50.86
Bra020241.1-P	Field mustard	mitochondrion	48.94	50.86
KRH29938	Soybean	mitochondrion	50.35	49.53
PGSC0003DMT400074993	Potato	cytosol, nucleus, plastid	9.22	41.05
Solyc11g069300.1.1	Tomato	cytosol	17.49	38.74

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.5.9	MapMan:27.3.2	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR44241	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
EnsemblPlantsGene:TraesCS1B01G477300	EnsemblPlants:TraesCS1B01G477300.1	TIGR:cd14008	SEG:seg	:	:

Description

No Description!

Coordinates

chr1B:+:685640080..685644442

Molecular Weight (calculated)

47041.7 Da

IEP (calculated)

5.013

GRAVY (calculated)

-0.429

Length

423 amino acids

Sequence
(BLAST)

001: MAADMAGCCC CCSCFGFLWK QPHRPAAGDS DGAPSKDLLL PRSNDGGSFY AGDDPDNSSS FLGDDSRSFY EREEEDYLLR QSDGDGDDKP PRKRSEDIIL
101: SRARNGFACR DSLVRDTRKL FRSEDETTGC KMINQYVHLG KIGAGSYGKV VKYQNIKDGR LYAIKVFSKP YMLKVRVVRS ETAMTDVLRE VSLMKMLDHP
201: NILNLIEVID DPNTDKFYMV LEFVEGKMVC NNGIGLGEAT SRKYLRDIVS GVMYLHSHNI IHGDIKPDNL LVTSTGNVKI GDFSVSQIFE DDDDMLWRSP
301: GTPVFTAPEC CQGSAYHGRT ADTWAVGVTL YCMITGKYPF LGETLQETYD KIANDPVEIP GDTSPQLADL MQRLLYKDPG DRMTLQAAAA HPWVAGAEGP
401: VPEFVCRCGF GRRNRNDSQE AVQ

Best Arabidopsis Sequence Match ( AT3G45240.1 )
(BLAST)

001: MFCDSFAFAQ VMSCFGCFGG SERSRHSPNP YDDDTYSHDS GETSNPGGDD EEGEEEEEVE ELSRSKRSEE ILKCKLQNGL VCRQFPVKET NKLTRGEDED
101: GNKTINEFVR ERKIGSGSYG KVVLYRSTVD DKHYAIKAFH KSHLSRLRVA PSETAMGDVL REVMIMKTLE HPNIVNLIEV IDDPEFDDFY MVLEYVDGKW
201: AYDDSGPPGA LGEITARKYL RDVVAGLMYL HAHNVIHGDI KPDNLLVTST GRVKIGDFSV SQVFKDDDDQ LRRSPGTPVF TAPECCLGIT YSGRSADTWA
301: VGVTLYCMIL GQYPFLGDTL QDTYDKIVHN PLIIPEGLNP RLRDLIEGLL CKDPNQRMTL KAVAEHPWIT GEDGAISEYC CWCKRKAEEE EDQNHS

Arabidopsis Description

GRIK1Serine/threonine-protein kinase GRIK1 [Source:UniProtKB/Swiss-Prot;Acc:Q93V58]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.