Factsheet for Zm00001d002827_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025946_P003	Maize	cytosol	93.1	91.78
Os03t0711300-01	Rice	cytosol	82.86	81.69
TraesCS4D01G045900.1	Wheat	cytosol	80.48	79.34
TraesCS4B01G046100.1	Wheat	cytosol	80.0	78.87
TraesCS4A01G268200.1	Wheat	cytosol	80.0	78.87
HORVU4Hr1G007440.1	Barley	cytosol	80.0	75.17
TraesCS1A01G443100.1	Wheat	cytosol, plasma membrane, plastid	71.43	72.82
TraesCS1D01G451100.1	Wheat	cytosol, plastid	72.62	72.62
TraesCS1B01G477300.1	Wheat	cytosol	72.86	72.34
HORVU1Hr1G094990.20	Barley	cytosol, plastid	62.14	61.7
GSMUA_Achr1P05590_001	Banana	mitochondrion	56.19	60.82
Solyc11g069310.1.1	Tomato	cytosol	30.48	60.38
VIT_06s0004g02990.t01	Wine grape	cytosol	54.52	57.11
PGSC0003DMT400020938	Potato	cytosol	54.05	56.19
KRH26430	Soybean	cytosol	53.1	54.52
KRH22907	Soybean	cytosol	53.1	54.39
KRH24883	Soybean	cytosol, plastid	51.9	53.3
AT3G45240.1	Thale cress	cytosol	49.76	52.78
CDY31536	Canola	cytosol	51.67	52.54
Bra002472.1-P	Field mustard	cytosol	51.67	52.54
CDX80157	Canola	cytosol	51.67	52.42
AT5G60550.1	Thale cress	mitochondrion	50.71	52.33
CDY09195	Canola	mitochondrion	49.52	51.11
Bra020241.1-P	Field mustard	mitochondrion	49.52	51.11
KRH29938	Soybean	mitochondrion	50.71	49.53
PGSC0003DMT400074993	Potato	cytosol, nucleus, plastid	10.0	44.21
Solyc11g069300.1.1	Tomato	cytosol	18.57	40.84

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.5.9	MapMan:27.3.2	UniProt:A0A1D6E4M8	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	ProteinID:ONM15453.1	ProteinID:ONM15456.1
ProteinID:ONM15457.1	ProteinID:ONM15458.1	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR44241	PANTHER:PTHR44241:SF1	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002210834	EnsemblPlantsGene:Zm00001d002827	EnsemblPlants:Zm00001d002827_P003	EnsemblPlants:Zm00001d002827_T003	SEG:seg

Description

Serine/threonine-protein kinase GRIK1

Coordinates

chr2:-:23925320..23947636

Molecular Weight (calculated)

47166.6 Da

IEP (calculated)

4.659

GRAVY (calculated)

-0.439

Length

420 amino acids

Sequence
(BLAST)

001: MADLTDIGCC CCFSFLRKPS VPVCEHQDAD GMLTEDLLKR QSAEDHDGSF YTGDDPGDDL DRSFYNGDDH DRSFYDRDDS DYLDGSDDGP SRKSSEDIIQ
101: LRAQNGFACR EVPVKETKKV FRSEDENGNK MVNQYVHLGK IGSGSYGKVV LYRNIKDGKL YAVKVLNKPY MMKVHVVHTK TAMTDVLREV SIMKMLNHPN
201: IVNLVEVIDD PNMDKFYMVL EYVEGKMVCD NGLEEATARF FLRDIISGLL YLHSHNVIHG DIKPDNLLVT STGNVKIGDF SVSQVFEDDD DMLWRSPGTP
301: VFTAPECCQG SAYHGRASDT WAVGVTLYCM VSGHYPFLGD TLQETYDKIA NDPVELPGDV NPQLADLLLR LLCKDPGDRI TLRAAAEHPW VAGDEGPVPE
401: FICRCGFGRR KRNDVREEVQ

Best Arabidopsis Sequence Match ( AT3G45240.1 )
(BLAST)

001: MFCDSFAFAQ VMSCFGCFGG SERSRHSPNP YDDDTYSHDS GETSNPGGDD EEGEEEEEVE ELSRSKRSEE ILKCKLQNGL VCRQFPVKET NKLTRGEDED
101: GNKTINEFVR ERKIGSGSYG KVVLYRSTVD DKHYAIKAFH KSHLSRLRVA PSETAMGDVL REVMIMKTLE HPNIVNLIEV IDDPEFDDFY MVLEYVDGKW
201: AYDDSGPPGA LGEITARKYL RDVVAGLMYL HAHNVIHGDI KPDNLLVTST GRVKIGDFSV SQVFKDDDDQ LRRSPGTPVF TAPECCLGIT YSGRSADTWA
301: VGVTLYCMIL GQYPFLGDTL QDTYDKIVHN PLIIPEGLNP RLRDLIEGLL CKDPNQRMTL KAVAEHPWIT GEDGAISEYC CWCKRKAEEE EDQNHS

Arabidopsis Description

GRIK1Serine/threonine-protein kinase GRIK1 [Source:UniProtKB/Swiss-Prot;Acc:Q93V58]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.