Factsheet for PGSC0003DMT400020938

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g069310.1.1	Tomato	cytosol	49.51	94.34
Solyc11g069300.1.1	Tomato	cytosol	38.61	81.68
PGSC0003DMT400074993	Potato	cytosol, nucleus, plastid	17.33	73.68
VIT_06s0004g02990.t01	Wine grape	cytosol	70.3	70.82
GSMUA_Achr1P05590_001	Banana	mitochondrion	66.09	68.81
KRH22907	Soybean	cytosol	66.09	65.12
KRH26430	Soybean	cytosol	65.84	65.04
KRH24883	Soybean	cytosol, plastid	65.1	64.3
AT5G60550.1	Thale cress	mitochondrion	63.61	63.15
AT3G45240.1	Thale cress	cytosol	61.63	62.88
CDX80157	Canola	cytosol	62.38	60.87
CDY31536	Canola	cytosol	62.13	60.77
Bra002472.1-P	Field mustard	cytosol	62.13	60.77
CDY09195	Canola	mitochondrion	61.14	60.69
Bra020241.1-P	Field mustard	mitochondrion	61.14	60.69
KRH29938	Soybean	mitochondrion	64.36	60.47
Os03t0711300-01	Rice	cytosol	59.65	56.57
Zm00001d025946_P003	Maize	cytosol	57.67	54.69
TraesCS4B01G046100.1	Wheat	cytosol	57.43	54.46
KXG37739	Sorghum	cytosol	57.18	54.23
TraesCS4A01G268200.1	Wheat	cytosol	57.18	54.23
Zm00001d002827_P003	Maize	cytosol	56.19	54.05
TraesCS1A01G443100.1	Wheat	cytosol, plasma membrane, plastid	54.7	53.64
TraesCS4D01G045900.1	Wheat	cytosol	56.44	53.52
TraesCS1D01G451100.1	Wheat	cytosol, plastid	55.2	53.1
TraesCS1B01G477300.1	Wheat	cytosol	54.46	52.01
HORVU4Hr1G007440.1	Barley	cytosol	57.18	51.68
HORVU1Hr1G094990.20	Barley	cytosol, plastid	50.99	48.7
OQU82027	Sorghum	cytosol	57.67	47.65

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.5.9	MapMan:27.3.2	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1AEB8	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400008108
PGSC:PGSC0003DMG400008108	EnsemblPlants:PGSC0003DMT400020938	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR44241	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI000296BEB9	SEG:seg	:	:	:	:

Description

Calcium/calmodulin-dependent protein kinase kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400008108]

Coordinates

chr11:+:41220521..41228124

Molecular Weight (calculated)

45650.2 Da

IEP (calculated)

4.854

GRAVY (calculated)

-0.474

Length

404 amino acids

Sequence
(BLAST)

001: MGCCGCFGFS FARKPKKVIR PNRGYGNNWS HEPLLQQEVE EVEDDGFDSG DIIDTGTEDD EVCHSPVKRS EEILMERAQN GLICREIPVK ETHKVVRTED
101: EDGNKMVNEY VREQKIGSGS YGKVVLYRSC TDGKHYAIKA FHKSHLLKMR VAPSETAMGD VLREVSIMKM VCHPNIVNLI EVIDDPETDN FYMVLEYVEG
201: KWVCEDTGPP SVLEENKARQ YLRDIVTGLM YLHSHNIIHG DIKPDNLLVT AAGRVKIGDF SVSQVFEDDN DKLRRSPGTP VFTAPECCVG DRYHGKSADT
301: WAVGVTLYCM ILGKYPFLGE TLQDTYDKIV NNPIILPDDM NPLLKNLLEG LLCKDPTQRL TLESVSQHEW FIGDEGPIPQ YSCWCQRHKL QKDVQDGSAE
401: DTPT

Best Arabidopsis Sequence Match ( AT3G45240.1 )
(BLAST)

001: MFCDSFAFAQ VMSCFGCFGG SERSRHSPNP YDDDTYSHDS GETSNPGGDD EEGEEEEEVE ELSRSKRSEE ILKCKLQNGL VCRQFPVKET NKLTRGEDED
101: GNKTINEFVR ERKIGSGSYG KVVLYRSTVD DKHYAIKAFH KSHLSRLRVA PSETAMGDVL REVMIMKTLE HPNIVNLIEV IDDPEFDDFY MVLEYVDGKW
201: AYDDSGPPGA LGEITARKYL RDVVAGLMYL HAHNVIHGDI KPDNLLVTST GRVKIGDFSV SQVFKDDDDQ LRRSPGTPVF TAPECCLGIT YSGRSADTWA
301: VGVTLYCMIL GQYPFLGDTL QDTYDKIVHN PLIIPEGLNP RLRDLIEGLL CKDPNQRMTL KAVAEHPWIT GEDGAISEYC CWCKRKAEEE EDQNHS

Arabidopsis Description

GRIK1Serine/threonine-protein kinase GRIK1 [Source:UniProtKB/Swiss-Prot;Acc:Q93V58]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.