Factsheet for VIT_06s0004g02990.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g069310.1.1	Tomato	cytosol	38.15	72.17
GSMUA_Achr1P05590_001	Banana	mitochondrion	69.58	71.91
PGSC0003DMT400020938	Potato	cytosol	70.82	70.3
KRH26430	Soybean	cytosol	71.07	69.68
KRH22907	Soybean	cytosol	70.57	69.02
KRH24883	Soybean	cytosol, plastid	69.33	67.97
AT3G45240.1	Thale cress	cytosol	64.59	65.4
AT5G60550.1	Thale cress	mitochondrion	65.34	64.37
KRH29938	Soybean	mitochondrion	68.83	64.19
PGSC0003DMT400074993	Potato	cytosol, nucleus, plastid	14.96	63.16
CDX80157	Canola	cytosol	64.84	62.8
CDY31536	Canola	cytosol	64.34	62.47
Bra002472.1-P	Field mustard	cytosol	64.34	62.47
CDY09195	Canola	mitochondrion	62.84	61.92
Bra020241.1-P	Field mustard	mitochondrion	62.84	61.92
VIT_06s0004g01140.t01	Wine grape	cytosol	44.14	61.89
Os03t0711300-01	Rice	cytosol	59.35	55.87
TraesCS1A01G443100.1	Wheat	cytosol, plasma membrane, plastid	56.61	55.1
Solyc11g069300.1.1	Tomato	cytosol	26.18	54.97
TraesCS1D01G451100.1	Wheat	cytosol, plastid	57.36	54.76
Zm00001d002827_P003	Maize	cytosol	57.11	54.52
Zm00001d025946_P003	Maize	cytosol	57.61	54.23
TraesCS4D01G045900.1	Wheat	cytosol	57.36	53.99
TraesCS4A01G268200.1	Wheat	cytosol	57.11	53.76
TraesCS1B01G477300.1	Wheat	cytosol	56.61	53.66
TraesCS4B01G046100.1	Wheat	cytosol	56.36	53.05
KXG37739	Sorghum	cytosol	56.36	53.05
HORVU4Hr1G007440.1	Barley	cytosol	56.86	51.01
HORVU1Hr1G094990.20	Barley	cytosol, plastid	50.12	47.52
OQU82027	Sorghum	cytosol	57.61	47.24

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100260436	wikigene:100260436	MapMan:18.4.5.9	MapMan:27.3.2	EMBL:AM435257
ProteinID:CAN82578	ProteinID:CAN82578.1	ProteinID:CCB43663	ProteinID:CCB43663.1	UniProt:F6GTZ9	EMBL:FN594951
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006468
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0018105	GO:GO:0018107	GO:GO:0019538	GO:GO:0035556	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	EntrezGene:LOC100260436	wikigene:LOC100260436	PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR44241	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI00015C7EEB	ArrayExpress:VIT_06s0004g02990	EnsemblPlantsGene:VIT_06s0004g02990	EnsemblPlants:VIT_06s0004g02990.t01
unigene:Vvi.17675	unigene:Vvi.23992	RefSeq:XP_002282279	RefSeq:XP_002282279.1	:	:

Description

No Description!

Coordinates

chr6:-:3720077..3729248

Molecular Weight (calculated)

44913.6 Da

IEP (calculated)

5.102

GRAVY (calculated)

-0.332

Length

401 amino acids

Sequence
(BLAST)

001: MGCCGCFGFV RKPESLSRPG SGSTNCLSQE FLLEEDIEEV DDRSYNGEVS DTAHGDDGEL QSRVQRSEEI LMLRTQNGMI CREFPVKETH KLIRSEDENG
101: NKTINEYVRE YKIGSGSYGK VVLYRSLKDG NHYAIKAFHK SHLLKLRVAP SETAMTDVLR EVLIMKMLNH PNIVNLIEVI DDPSTDHFYM VLEFVEGKWV
201: CEGSGPPGGI GENTARKYLR DIVSGLIYLH AHNIVHGDIK PDNLLVTRTG TVKIADFSVS QVFEDDNDEL RRSPGTPVFT APECCLGLTY HGKAADTWAV
301: GVTLYCMVLG QYPFLGESLQ DTYDKIVNNL LSLPDNINPQ LRNLLEGLLC KDPNERMTLD AVAKHAWVIG EEGPIPQYLC WCRRNILLRE DPVGNGKSTL
401: T

Best Arabidopsis Sequence Match ( AT5G60550.1 )
(BLAST)

001: MFRDSFLFAR TIGCFGCFGS SGSRNQQSPK PYDDDTHSCD SDVTSTARGE EEEDEEEVEQ KSRSKRSEEI LKYRLDNGLI CRHIPVRETN ELIRGEDENG
101: DKTINEYVRV CKIGSGSYGK VVLYRSTLDG QYYAIKAFHK SHLLRLRVAP SETAMSDVLR EVMIMKILEH PNIVNLIEVI DDPETDHFYM VLEYVDGKWV
201: YDGSGPPGAL GEKTARKYLR DIVTGLMYLH AHDVIHGDIK PDNLLVTSSG TVKIGDFSVS QVFKDDDDQL RRSPGTPVFT APECCLVSGI TYSGRAADTW
301: AVGVTLYCMI LGQYPFLADT LQDTYDKIVN NPLIIPDGLN PLLRDLIEGL LCKDPSQRMT LKNVSEHPWV IGEDGHVPEY FCWCKRNAAS KIEEGEANGI
401: SETSDPN

Arabidopsis Description

GRIK2Serine/threonine-protein kinase GRIK2 [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ38]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.