Factsheet for TraesCS2A01G079500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G076900.1	Wheat	unclear	99.02	98.92
TraesCS2B01G094300.1	Wheat	mitochondrion	99.02	98.82
HORVU2Hr1G013170.1	Barley	mitochondrion	95.48	98.48
Os07t0695800-01	Rice	mitochondrion	91.54	92.36
Zm00001d036328_P001	Maize	mitochondrion	91.25	91.34
CDY53693	Canola	mitochondrion	74.43	84.2
CDY62385	Canola	mitochondrion	74.34	84.09
CDY13078	Canola	cytosol, mitochondrion	74.14	83.87
CDY29088	Canola	cytosol, mitochondrion	74.14	83.87
CDY45626	Canola	mitochondrion	73.75	82.96
CDY08754	Canola	mitochondrion	73.75	82.96
GSMUA_Achr5P28580_001	Banana	mitochondrion	70.8	81.26
TraesCS2A01G284400.1	Wheat	nucleus	80.63	80.71
Solyc04g011350.2.1	Tomato	plastid	79.84	79.61
Bra003211.1-P	Field mustard	mitochondrion	79.15	79.23
PGSC0003DMT400071319	Potato	mitochondrion	79.45	79.22
AT3G55410.2	Thale cress	mitochondrion	78.96	78.96
Bra024417.1-P	Field mustard	mitochondrion	78.56	78.8
GSMUA_Achr8P02070_001	Banana	mitochondrion	75.22	78.78
VIT_13s0019g00510.t01	Wine grape	mitochondrion	72.17	78.42
PGSC0003DMT400060466	Potato	mitochondrion	78.27	78.12
Bra027582.1-P	Field mustard	mitochondrion	78.27	78.12
Solyc05g054640.2.1	Tomato	nucleus, unclear	73.25	78.09
AT5G65750.1	Thale cress	mitochondrion	78.56	77.95
KRG90561	Soybean	mitochondrion	76.99	76.69
KRH01603	Soybean	nucleus	76.3	75.71
KRH70503	Soybean	nucleus	76.11	75.22
KRH36194	Soybean	cytosol, mitochondrion	11.9	67.98

Protein Annotations

KEGG:00020+1.2.4.2	KEGG:00310+1.2.4.2	KEGG:00380+1.2.4.2	Gene3D:1.10.287.1150	InterPro:2-oxogl_dehyd_N	MapMan:2.3.4.1
InterPro:2oxoglutarate_DH_E1	Gene3D:3.40.50.11610	Gene3D:3.40.50.12470	Gene3D:3.40.50.970	InterPro:DH_E1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004591	GO:GO:0005488	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016624	GO:GO:0030976	GO:GO:0055114	InterPro:KGD_C
PFAM:PF00676	PFAM:PF02779	PFAM:PF16078	PFAM:PF16870	PIRSF:PIRSF000157	PANTHER:PTHR23152
PANTHER:PTHR23152:SF4	SMART:SM00861	SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR00239	EnsemblPlantsGene:TraesCS2A01G079500
EnsemblPlants:TraesCS2A01G079500.1	InterPro:Transketolase-like_Pyr-bd	TIGR:cd02016	SEG:seg	:	:

Description

No Description!

Coordinates

chr2A:+:36047811..36053052

Molecular Weight (calculated)

114775.0 Da

IEP (calculated)

6.861

GRAVY (calculated)

-0.410

Length

1017 amino acids

Sequence
(BLAST)

0001: MTWLRAATGL ARHAARRAAL ARATIPTPGA RSAGFHTSAL RRRAAAPAPR AVPLSRLTDS FLDGTSSVYL EELQRAWEAD PASVDESWDN FFRNFLGQAA
0101: SPTAGLSGQT IQESMQLLLL VRAYQVNGHM KAALDPLGLD DRAVPEDLDL ALYGFTEADL DREFFLGVWM MAGFLSENRP VLTLREILSK LERAYCGPIG
0201: FEYMHIPDRD KCNWLREKIE TVAPREYPKD RRLVMLDRLI WSTQFENFLA TKWATAKRFG LEGGETLIPG MKEMFDRSAD LGVENIVIGM PHRGRLNVLG
0301: NVVRKPLSQI FSEFAGGTRP VEGEDGLYTG TGDVKYHLGT SYDRPTRGGK RIHLSLVANP SHLEAVDPVV IGKTRAKQFY SNDDDRTKNM GILIHGDGSF
0401: AGQGVVYETL HLSALPNYTT GGTIHIVVNN QVAFTTDPRA GRSSQYCTDV AKAVNVPIFH VNGDDLEAVV RVCELAAEWR QTFHSDVVVD LICYRRFGHN
0501: EIDEPSFTQP KMYQVIKNHP SSLKLYEQKL LETGEVTKDD VQRIHDKVNR ILNEEFAKSK DYVPNKRDWL SAYWTGFKSP EQISRVRNTG VKPEVLKRVG
0601: QAITTLPESF KPHRAVKKIF EQRAAMIESG EGIDWAVAEA LAFAALIVEG NHVRLSGQDV ERGTFSHRHS VVHDQETGAK YCPLDHVVMN QNEELFTVSN
0701: SSLSEFAVLG FELGYSMENP NSLVLWEAQF GDFSNGAQVM FDQFLSSGEA KWLRQTGLVV LLPHGYDGQG PEHSSSRLER FLQMSDDNPF VIPEMDPTLR
0801: KQIQECNWQV VNVTTPANYF HVLRRQIHRD FRKPLIVTAP KNLLRHKECK SNLSEFDDVE GHPGFDKQGT RFKRLIKDRN DHKEVEEGIN RLVLCSGKVY
0901: YELDDERKKS ERSDVAICRV EQLSPFPYDL IQRELKRYPN AEIVWCQEEP MNMGAYSYIS PRLYSAMKTL GRGTFEDIKY VGRAPSAATA TGFLTVHVQE
1001: QSELVKKALQ PEPIKFP

Best Arabidopsis Sequence Match ( AT3G55410.1 )
(BLAST)

0001: MVWFRAGSSV TKLAVRRILN QGASYATRTR SIPSQTRSFH STICRPKAQS APVPRAVPLS KLTDSFLDGT SSVYLEELQR AWEADPNSVD ESWDNFFRNF
0101: VGQAATSPGI SGQTIQESMR LLLLVRAYQV NGHMKAKLDP LGLEQREIPE DLDLALYGFT EADLDREFFL GVWQMSGFMS ENRPVQTLRS ILTRLEQAYC
0201: GNIGFEYMHI ADRDKCNWLR EKIETPTPWR YNRERREVIL DRLAWSTQFE NFLATKWTTA KRFGLEGGES LIPGMKEMFD RAADLGVESI VIGMSHRGRL
0301: NVLGNVVRKP LRQIFSEFSG GIRPVDEVGY TGTGDVKYHL GTSYDRPTRG GKKIHLSLVA NPSHLEAADS VVVGKTRAKQ YYSNDLDRTK NLGILIHGDG
0401: SFAGQGVVYE TLHLSALPNY TTGGTIHIVV NNQVAFTTDP RAGRSSQYCT DVAKALSAPI FHVNGDDVEA VVHACELAAE WRQTFHSDVV VDLVCYRRFG
0501: HNEIDEPSFT QPKMYKVIKN HPSTLQIYHK KLLECGEVSQ QDIDRIQEKV NTILNEEFVA SKDYLPKKRD WLSTNWAGFK SPEQISRVRN TGVKPEILKT
0601: VGKAISSLPE NFKPHRAVKK VYEQRAQMIE SGEGVDWALA EALAFATLVV EGNHVRLSGQ DVERGTFSHR HSVLHDQETG EEYCPLDHLI MNQDPEMFTV
0701: SNSSLSEFGV LGFELGYSME SPNSLVLWEA QFGDFANGAQ VIFDQFISSG EAKWLRQTGL VMLLPHGYDG QGPEHSSARL ERYLQMSDDN PYVIPDMEPT
0801: MRKQIQECNW QIVNATTPAN YFHVLRRQIH RDFRKPLIVM APKNLLRHKD CKSNLSEFDD VQGHPGFDKQ GTRFKRLIKD QNDHSDLEEG IRRLVLCSGK
0901: VYYELDDERK KVGATDVAIC RVEQLCPFPY DLIQRELKRY PNAEIVWCQE EAMNMGAFSY ISPRLWTAMR SVNRGDMEDI KYVGRGPSAA TATGFYTFHV
1001: KEQAGLVQKA IGKEPIN

Arabidopsis Description

2-oxoglutarate dehydrogenase, E1 component [Source:UniProtKB/TrEMBL;Acc:F4IWV2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.