Factsheet for Solyc05g054640.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060466	Potato	mitochondrion	98.53	92.25
Solyc04g011350.2.1	Tomato	plastid	91.09	85.2
VIT_13s0019g00510.t01	Wine grape	mitochondrion	78.41	79.91
CDY08754	Canola	mitochondrion	74.53	78.65
CDY45626	Canola	mitochondrion	74.42	78.54
Bra024417.1-P	Field mustard	mitochondrion	83.44	78.5
AT3G55410.2	Thale cress	mitochondrion	83.65	78.47
GSMUA_Achr5P28580_001	Banana	mitochondrion	72.54	78.1
AT5G65750.1	Thale cress	mitochondrion	83.75	77.95
TraesCS2D01G283300.2	Wheat	golgi	82.6	77.56
TraesCS2B01G301400.2	Wheat	unclear	82.6	77.56
TraesCS2A01G284400.1	Wheat	nucleus	82.6	77.56
Bra003211.1-P	Field mustard	mitochondrion	82.6	77.56
Os04t0390000-02	Rice	mitochondrion	82.6	77.56
CDY53693	Canola	mitochondrion	73.06	77.53
CDY62385	Canola	mitochondrion	73.06	77.53
CDY29088	Canola	cytosol, mitochondrion	72.85	77.31
CDY13078	Canola	cytosol, mitochondrion	72.75	77.2
EES10635	Sorghum	mitochondrion	82.91	77.17
EES10634	Sorghum	mitochondrion	82.81	77.07
Bra027582.1-P	Field mustard	mitochondrion	82.18	76.94
KRG90561	Soybean	mitochondrion	81.87	76.49
Zm00001d025240_P002	Maize	mitochondrion	82.18	76.49
KRH01603	Soybean	nucleus	82.18	76.49
KRH70503	Soybean	nucleus	81.97	76.0
HORVU2Hr1G013170.1	Barley	mitochondrion	78.2	75.66
GSMUA_Achr10P...	Banana	mitochondrion	78.83	75.58
GSMUA_Achr8P02070_001	Banana	mitochondrion	76.52	75.18
Zm00001d003947_P005	Maize	mitochondrion	82.29	75.05
Os07t0695800-01	Rice	mitochondrion	77.99	73.81
TraesCS2A01G079500.1	Wheat	golgi	78.09	73.25
TraesCS2D01G076900.1	Wheat	unclear	77.99	73.08
Zm00001d036328_P001	Maize	mitochondrion	77.78	73.03
HORVU2Hr1G070090.1	Barley	mitochondrion	79.35	72.93
TraesCS2B01G094300.1	Wheat	mitochondrion	77.88	72.91
Zm00001d047592_P005	Maize	cytosol	13.52	72.07
KRH36194	Soybean	cytosol, mitochondrion	12.89	69.1
Zm00001d021330_P001	Maize	cytosol	9.01	50.89
Zm00001d023552_P001	Maize	plastid	9.96	49.22

Protein Annotations

KEGG:00020+1.2.4.2	KEGG:00310+1.2.4.2	KEGG:00380+1.2.4.2	Gene3D:1.10.287.1150	InterPro:2-oxogl_dehyd_N	MapMan:2.3.4.1
InterPro:2oxoglutarate_DH_E1	Gene3D:3.40.50.11610	Gene3D:3.40.50.12470	Gene3D:3.40.50.970	ncoils:Coil	InterPro:DH_E1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004591	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016624	GO:GO:0030976	GO:GO:0045252	GO:GO:0055114
UniProt:K4C2E1	InterPro:KGD_C	PFAM:PF00676	PFAM:PF02779	PFAM:PF16078	PFAM:PF16870
PIRSF:PIRSF000157	PANTHER:PTHR23152	PANTHER:PTHR23152:SF4	SMART:SM00861	SUPFAM:SSF52518	EnsemblPlantsGene:Solyc05g054640.2
EnsemblPlants:Solyc05g054640.2.1	InterPro:THDP-binding	TIGRFAMs:TIGR00239	InterPro:Transketolase-like_Pyr-bd	UniParc:UPI0002766CB1	SEG:seg

Description

No Description!

Coordinates

chr5:+:64510232..64515569

Molecular Weight (calculated)

107590.0 Da

IEP (calculated)

7.217

GRAVY (calculated)

-0.416

Length

954 amino acids

Sequence
(BLAST)

001: MAWFRASSSV AKLAIRRALS QGGSYVPRTR ILPSQGRYFH TTVVRPRAQA APVPRPVPLS KLTDSFLDGT SSVYLEELQR AWEQDPNSVD ESWDNFFRNF
101: VGQAATSPGI SGQTIQESMR LLLLVRAYQK RGKYLNDLDP ALYGFTEADL DREFFLGVWK MSGFLSENRP VQTLKAILTR LEQAYCGSIG YEYMHISDRD
201: KCCETLIPGM KEMFDRAADL GVESIVIGMP HRGRLNVLGN VVRKPLKQIF SEFSGGIKPG DDAGYVGTGD VKYHLGTSYD RPTRGGKRIH LSLVANPSHL
301: EAVNPVVIGK TRAKQYYTND EDRTKSMGIL LHGDGSFAGQ GVVYETLHLS ALPNYTTGGT IHIVVNNQVA FTTDPTAGRS SQYCTDVAKA LDIPIFHVNG
401: DDVEAVAHVC ELAAEWRQKF HADVVVDIVC YRRFGHNEID EPSFTQPKMY KIIRNHPSSL EIYQNKLLNS GQVAKDDVEK IHNKINRILN EEFIASKDYV
501: PQKRDWLSAF WSGFKSPSQL SRVRNTGVKP EILTNVGKAI TTFPDGFKPH RALKRVFDDR RKMIETGEGV DWAVGEALAF ATLLVEGNHV RLSGQDVERG
601: TFSHRHSVIH DQETGAQYCP LDHVMMNQNE EMFTVSNSSL SEFGVLGFEL GYSMENPNSL VIWEAQFGDF ANGAQVIFDQ FVSSGEAKWL RQTGLVVLLP
701: HGYDGQGPEH SSGRLERFLQ MSDDNPFVIP EMEPTLRKQI QECNWQVVNV TTPANYFHVL RRQIHRDFRK PLIVMAPKNL LRHKSCKSNL SEFDDVQGHP
801: GFDKQGTRFK RLIKDQNDHS DLEEGIRRLV LCSGKIYYEL DEERAKADGK DIAICRVEQL CPFPYDLIQR ELKRYPNAEV VWCQEEPMNM GAFNYIAPRL
901: STAMKSLGRG NMDDIKYVGR APSAATATGF FQVHVKEQTE LVQKALQQDP INQI

Best Arabidopsis Sequence Match ( AT3G55410.1 )
(BLAST)

0001: MVWFRAGSSV TKLAVRRILN QGASYATRTR SIPSQTRSFH STICRPKAQS APVPRAVPLS KLTDSFLDGT SSVYLEELQR AWEADPNSVD ESWDNFFRNF
0101: VGQAATSPGI SGQTIQESMR LLLLVRAYQV NGHMKAKLDP LGLEQREIPE DLDLALYGFT EADLDREFFL GVWQMSGFMS ENRPVQTLRS ILTRLEQAYC
0201: GNIGFEYMHI ADRDKCNWLR EKIETPTPWR YNRERREVIL DRLAWSTQFE NFLATKWTTA KRFGLEGGES LIPGMKEMFD RAADLGVESI VIGMSHRGRL
0301: NVLGNVVRKP LRQIFSEFSG GIRPVDEVGY TGTGDVKYHL GTSYDRPTRG GKKIHLSLVA NPSHLEAADS VVVGKTRAKQ YYSNDLDRTK NLGILIHGDG
0401: SFAGQGVVYE TLHLSALPNY TTGGTIHIVV NNQVAFTTDP RAGRSSQYCT DVAKALSAPI FHVNGDDVEA VVHACELAAE WRQTFHSDVV VDLVCYRRFG
0501: HNEIDEPSFT QPKMYKVIKN HPSTLQIYHK KLLECGEVSQ QDIDRIQEKV NTILNEEFVA SKDYLPKKRD WLSTNWAGFK SPEQISRVRN TGVKPEILKT
0601: VGKAISSLPE NFKPHRAVKK VYEQRAQMIE SGEGVDWALA EALAFATLVV EGNHVRLSGQ DVERGTFSHR HSVLHDQETG EEYCPLDHLI MNQDPEMFTV
0701: SNSSLSEFGV LGFELGYSME SPNSLVLWEA QFGDFANGAQ VIFDQFISSG EAKWLRQTGL VMLLPHGYDG QGPEHSSARL ERYLQMSDDN PYVIPDMEPT
0801: MRKQIQECNW QIVNATTPAN YFHVLRRQIH RDFRKPLIVM APKNLLRHKD CKSNLSEFDD VQGHPGFDKQ GTRFKRLIKD QNDHSDLEEG IRRLVLCSGK
0901: VYYELDDERK KVGATDVAIC RVEQLCPFPY DLIQRELKRY PNAEIVWCQE EAMNMGAFSY ISPRLWTAMR SVNRGDMEDI KYVGRGPSAA TATGFYTFHV
1001: KEQAGLVQKA IGKEPIN

Arabidopsis Description

2-oxoglutarate dehydrogenase, E1 component [Source:UniProtKB/TrEMBL;Acc:F4IWV2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.