Factsheet for Zm00001d036328_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047592_P005	Maize	cytosol	17.13	97.21
Os07t0695800-01	Rice	mitochondrion	92.22	92.96
HORVU2Hr1G013170.1	Barley	mitochondrion	89.96	92.7
TraesCS2B01G094300.1	Wheat	mitochondrion	91.54	91.27
TraesCS2D01G076900.1	Wheat	unclear	91.44	91.26
TraesCS2A01G079500.1	Wheat	golgi	91.34	91.25
CDY53693	Canola	mitochondrion	74.31	83.98
CDY62385	Canola	mitochondrion	74.21	83.87
CDY13078	Canola	cytosol, mitochondrion	73.92	83.54
CDY29088	Canola	cytosol, mitochondrion	73.92	83.54
CDY08754	Canola	mitochondrion	73.92	83.08
CDY45626	Canola	mitochondrion	73.92	83.08
GSMUA_Achr5P28580_001	Banana	mitochondrion	70.18	80.47
Zm00001d025240_P002	Maize	mitochondrion	80.22	79.51
Solyc04g011350.2.1	Tomato	plastid	79.43	79.12
Bra024417.1-P	Field mustard	mitochondrion	78.74	78.9
GSMUA_Achr8P02070_001	Banana	mitochondrion	75.39	78.89
PGSC0003DMT400071319	Potato	mitochondrion	79.13	78.82
Bra003211.1-P	Field mustard	mitochondrion	78.74	78.74
AT3G55410.2	Thale cress	mitochondrion	78.74	78.66
VIT_13s0019g00510.t01	Wine grape	mitochondrion	72.44	78.63
AT5G65750.1	Thale cress	mitochondrion	78.64	77.95
PGSC0003DMT400060466	Potato	mitochondrion	78.15	77.92
Zm00001d003947_P005	Maize	mitochondrion	80.12	77.82
Solyc05g054640.2.1	Tomato	nucleus, unclear	73.03	77.78
Bra027582.1-P	Field mustard	mitochondrion	77.95	77.72
KRG90561	Soybean	mitochondrion	77.07	76.69
KRH01603	Soybean	nucleus	76.38	75.71
KRH70503	Soybean	nucleus	75.98	75.02
KRH36194	Soybean	cytosol, mitochondrion	11.91	67.98
Zm00001d021330_P001	Maize	cytosol	9.65	57.99
Zm00001d021889_P001	Maize	cytosol	2.85	55.77
Zm00001d023552_P001	Maize	plastid	9.55	50.26

Protein Annotations

KEGG:00020+1.2.4.2	KEGG:00310+1.2.4.2	KEGG:00380+1.2.4.2	Gene3D:1.10.287.1150	InterPro:2-oxogl_dehyd_N	MapMan:2.3.4.1
InterPro:2oxoglutarate_DH_E1	Gene3D:3.40.50.11610	Gene3D:3.40.50.12470	Gene3D:3.40.50.970	UniProt:A0A1D6LLS4	ProteinID:AQK80631.1
InterPro:DH_E1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004591	GO:GO:0005488	GO:GO:0006091
GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016624	GO:GO:0030976
GO:GO:0055114	InterPro:KGD_C	PFAM:PF00676	PFAM:PF02779	PFAM:PF16078	PFAM:PF16870
PIRSF:PIRSF000157	PANTHER:PTHR23152	PANTHER:PTHR23152:SF4	SMART:SM00861	SUPFAM:SSF52518	InterPro:THDP-binding
TIGRFAMs:TIGR00239	InterPro:Transketolase-like_Pyr-bd	UniParc:UPI0002210BBB	EnsemblPlantsGene:Zm00001d036328	EnsemblPlants:Zm00001d036328_P001	EnsemblPlants:Zm00001d036328_T001
SEG:seg	:	:	:	:	:

Description

2-oxoglutarate dehydrogenase E1 component

Coordinates

chr6:-:84474290..84479106

Molecular Weight (calculated)

114818.0 Da

IEP (calculated)

7.209

GRAVY (calculated)

-0.398

Length

1016 amino acids

Sequence
(BLAST)

0001: MTWFRAASGA ARLALRRSLA TRTPPAAATR CGRCFHSTAM RPRSAAPVPR AVPLSRLSDS FLDGTSSVYL EELQRTWEAD PSSVDESWDN FFRNFVAQAS
0101: PSAGVSGQTI QESMQLLLLV RAYQVNGHMM AKLDPLGLDD RAVPEDLRLG LYGFTEADLD REFFLGVWRM SGFLSENRPV LTLREILNKL QQAYCGPIGY
0201: EYMHIPDRDK CNWLREKIET AKPKEYNKDR RLVMLDRLIW STQFENFLAT KWATAKRFGL EGGETLIPGM KEMFDRAADL GVENIVIGMP HRGRLNVLGN
0301: VVRKPLSQIF SEFTGGTRPV EGEDGLYTGT GDVKYHLGTS YDRPTRGGNR IHLSLVANPS HLEAVDPVVI GKTRAKQFYS NDADRTKNMG ILIHGDGSFA
0401: GQGVVYETLH LSALPNYTTG GTIHIVVNNQ VAFTTDPRAG RSSQYCTDVA KALNAPIFHV NGDDLEAVVC VCELAAEWRQ TFHSDVVVDL ICYRRFGHNE
0501: IDEPSFTQPK MYQVIKNHPS SLKLYEQKLL GTGEVMKEDV QRIHDKVNRI LNEEFAKSKD YVPNKRDWLS AYWTGFKSPE QISRVRNTGV KPEILKRVGQ
0601: AITTLPENFK PHRAVKKIFE LRAAMIESGQ GIDWAVAEAL AFATLIVEGN HVRLSGQDVE RGTFSHRHAV LHDQETGAKY CPLDHVAMDQ NEELFTVSNS
0701: SLSEFAVLGF ELGYSMENPN SLVLWEAQFG DFANGAQVMF DQFLSSGEAK WLRQTGLVVL LPHGYDGQGP EHSSARLERF LQMSDDNPFV IPEMEPTLRK
0801: QIQECNWQVV NVTTPANYFH LLRRQIHREF RKPLIVTAPK NLLRHKDCKS NLSEFDDVEG HLGFDKQGTR FKRLIKDRND HKQVEEGVNR LILCSGKVYY
0901: ELDEERKKSE RGDVAICRVE QLCPFPYDLI QRELKRYPNA EIVWCQEEPM NMGAYSYISP RLFTAMKALG RGSFEDIKYV GRAPSAATAT GFLSVHAQEQ
1001: SELVKKALQA EPIKFL

Best Arabidopsis Sequence Match ( AT3G55410.1 )
(BLAST)

0001: MVWFRAGSSV TKLAVRRILN QGASYATRTR SIPSQTRSFH STICRPKAQS APVPRAVPLS KLTDSFLDGT SSVYLEELQR AWEADPNSVD ESWDNFFRNF
0101: VGQAATSPGI SGQTIQESMR LLLLVRAYQV NGHMKAKLDP LGLEQREIPE DLDLALYGFT EADLDREFFL GVWQMSGFMS ENRPVQTLRS ILTRLEQAYC
0201: GNIGFEYMHI ADRDKCNWLR EKIETPTPWR YNRERREVIL DRLAWSTQFE NFLATKWTTA KRFGLEGGES LIPGMKEMFD RAADLGVESI VIGMSHRGRL
0301: NVLGNVVRKP LRQIFSEFSG GIRPVDEVGY TGTGDVKYHL GTSYDRPTRG GKKIHLSLVA NPSHLEAADS VVVGKTRAKQ YYSNDLDRTK NLGILIHGDG
0401: SFAGQGVVYE TLHLSALPNY TTGGTIHIVV NNQVAFTTDP RAGRSSQYCT DVAKALSAPI FHVNGDDVEA VVHACELAAE WRQTFHSDVV VDLVCYRRFG
0501: HNEIDEPSFT QPKMYKVIKN HPSTLQIYHK KLLECGEVSQ QDIDRIQEKV NTILNEEFVA SKDYLPKKRD WLSTNWAGFK SPEQISRVRN TGVKPEILKT
0601: VGKAISSLPE NFKPHRAVKK VYEQRAQMIE SGEGVDWALA EALAFATLVV EGNHVRLSGQ DVERGTFSHR HSVLHDQETG EEYCPLDHLI MNQDPEMFTV
0701: SNSSLSEFGV LGFELGYSME SPNSLVLWEA QFGDFANGAQ VIFDQFISSG EAKWLRQTGL VMLLPHGYDG QGPEHSSARL ERYLQMSDDN PYVIPDMEPT
0801: MRKQIQECNW QIVNATTPAN YFHVLRRQIH RDFRKPLIVM APKNLLRHKD CKSNLSEFDD VQGHPGFDKQ GTRFKRLIKD QNDHSDLEEG IRRLVLCSGK
0901: VYYELDDERK KVGATDVAIC RVEQLCPFPY DLIQRELKRY PNAEIVWCQE EAMNMGAFSY ISPRLWTAMR SVNRGDMEDI KYVGRGPSAA TATGFYTFHV
1001: KEQAGLVQKA IGKEPIN

Arabidopsis Description

2-oxoglutarate dehydrogenase, E1 component [Source:UniProtKB/TrEMBL;Acc:F4IWV2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.