CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 27780359
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01603	Soybean	nucleus	97.47	97.85
KRG90561	Soybean	mitochondrion	88.05	88.74
VIT_13s0019g00510.t01	Wine grape	mitochondrion	77.07	84.72
CDY62385	Canola	mitochondrion	72.98	83.54
CDY45626	Canola	mitochondrion	73.37	83.52
CDY53693	Canola	mitochondrion	72.89	83.43
CDY08754	Canola	mitochondrion	73.08	83.19
Bra024417.1-P	Field mustard	mitochondrion	81.63	82.84
CDY13078	Canola	cytosol, mitochondrion	72.3	82.76
CDY29088	Canola	cytosol, mitochondrion	72.3	82.76
AT3G55410.2	Thale cress	mitochondrion	81.73	82.69
Bra003211.1-P	Field mustard	mitochondrion	81.44	82.48
Solyc04g011350.2.1	Tomato	plastid	81.73	82.45
AT5G65750.1	Thale cress	mitochondrion	81.83	82.15
Solyc05g054640.2.1	Tomato	nucleus, unclear	76.0	81.97
PGSC0003DMT400071319	Potato	mitochondrion	81.24	81.96
GSMUA_Achr5P28580_001	Banana	mitochondrion	70.17	81.49
PGSC0003DMT400060466	Potato	mitochondrion	80.66	81.45
Bra027582.1-P	Field mustard	mitochondrion	80.37	81.16
GSMUA_Achr10P...	Banana	mitochondrion	78.33	81.0
Os04t0390000-02	Rice	mitochondrion	79.79	80.81
TraesCS2B01G301400.2	Wheat	unclear	79.69	80.71
TraesCS2A01G284400.1	Wheat	nucleus	79.59	80.61
TraesCS2D01G283300.2	Wheat	golgi	79.59	80.61
EES10635	Sorghum	mitochondrion	79.88	80.2
EES10634	Sorghum	mitochondrion	79.88	80.2
GSMUA_Achr8P02070_001	Banana	mitochondrion	75.51	80.02
Zm00001d025240_P002	Maize	mitochondrion	79.2	79.51
HORVU2Hr1G013170.1	Barley	mitochondrion	75.51	78.8
Zm00001d003947_P005	Maize	mitochondrion	79.59	78.3
Os07t0695800-01	Rice	mitochondrion	75.51	77.08
KRH36194	Soybean	cytosol, mitochondrion	13.31	76.97
HORVU2Hr1G070090.1	Barley	mitochondrion	77.36	76.69
TraesCS2B01G094300.1	Wheat	mitochondrion	75.41	76.15
TraesCS2D01G076900.1	Wheat	unclear	75.32	76.13
TraesCS2A01G079500.1	Wheat	golgi	75.22	76.11
Zm00001d036328_P001	Maize	mitochondrion	75.02	75.98
Zm00001d047592_P005	Maize	cytosol	12.24	70.39
Zm00001d021330_P001	Maize	cytosol	8.36	50.89
Zm00001d023552_P001	Maize	plastid	9.14	48.7

Protein Annotations

KEGG:00020+1.2.4.2	KEGG:00310+1.2.4.2	KEGG:00380+1.2.4.2	Gene3D:1.10.287.1150	EntrezGene:100786978	InterPro:2-oxogl_dehyd_N
MapMan:2.3.4.1	InterPro:2oxoglutarate_DH_E1	Gene3D:3.40.50.11610	Gene3D:3.40.50.12470	Gene3D:3.40.50.970	EMBL:ACUP02000780
InterPro:DH_E1	EnsemblPlantsGene:GLYMA_02G094300	GO:GO:0003674	GO:GO:0003824	GO:GO:0004591	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091
GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016624	GO:GO:0030976
GO:GO:0045252	GO:GO:0055114	UniProt:I1JDR2	InterPro:KGD_C	EnsemblPlants:KRH70503	ProteinID:KRH70503
ProteinID:KRH70503.1	PFAM:PF00676	PFAM:PF02779	PFAM:PF16078	PFAM:PF16870	PIRSF:PIRSF000157
PANTHER:PTHR23152	PANTHER:PTHR23152:SF4	MetaCyc:PWY-5084	SMART:SM00861	SUPFAM:SSF52518	InterPro:THDP-binding
TIGRFAMs:TIGR00239	InterPro:Transketolase-like_Pyr-bd	UniParc:UPI0002337447	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:8448455..8455698

Molecular Weight (calculated)

116476.0 Da

IEP (calculated)

6.797

GRAVY (calculated)

-0.411

Length

1029 amino acids

Sequence
(BLAST)

0001: MAWFRAGTSI AKHAIRRTLS KGGSTYLVSR ARFLPSIPSS SSSPYSRSFH STVFKEQAAP VPRAVPLSKL TDSFLDGTSS VYLEELQRAW EADPNSVDES
0101: WDNFFRNFVG QATTSPGISG QTIQESMRLL LLVRAYQVNG HMKAKLDPLN LEPRQISEDL DPALYGFTEA DLDREFFLGV WRMAGFLSEN RPVQTLRSIL
0201: TRLEQAYCGS IGYEYMHIAD RHKCNWLRDK IETPTPTQFN RERREAIFDR LAWSSLFENF LATKWTSAKR FGLEGGETLI PGMKEMFDRA SDLGVESIVI
0301: GMAHRGRLNV LGNVVRKPLR QIFCEFSGGL QPEGEVGLYT GTGDVKYHLG TSYDRPTRGG KRIHLSLVAN PSHLEAVNPL VIGKTRAKQY YANDVDRTKN
0401: MGVLIHGDGS FAGQGVVYET LHLSALPNYT TGGTIHIVFN NQVAFTTDPT SGRSSQYCTD VAKALDAPIF HVNGDDVEAV VHACELAAEW RQTFHSDVVV
0501: DLVCYRRFGH NEIDEPSFTQ PKMYKVIRSH PSTLEIYEKN LLESGELTQE EIDRIHKKVT SILNEEFLAS KEYIPKRRDW LSAYWLGFKS PEQLSRIRNT
0601: GVKPEILKTV GKAITTIPEN FTPHRAVKRI YEQRAQMIET GEDIDWGFAE ALAYATLLIE GNHVRLSGQD VERGTFSHRH AVVHDQTTGE KYCPLDHVIM
0701: NQDEEMFTVS NSSLSEFGVL GFELGYSMEN PNSLIIWEAQ FGDFANGAHV IFDNFLASGE AKWLRQTGLV VLLPHGYDGQ GPEHSSARLE RFLQMADDNP
0801: HVIPEMDPTL RKQIQECNLQ IVNVTTPANF FHVLRRQVHR DFRKPLIVMS PKNLLRSKAC RSNLSEFDDV QGHPGFDKQG TRFKRLIKDQ NAHKDVEEGI
0901: RRLVLCSGKV YYELDEQRTK VDANDVAICR VEQLCPFPYD LVQRELKRYP NAEVVWCQEE PMNMGGYTYV LPRLISSMKA VNRGGYDDVK YIGRAPSAAT
1001: ATGFLKVHQK EQTEIAEKAV QQEPIDFPF

Best Arabidopsis Sequence Match ( AT3G55410.1 )
(BLAST)

0001: MVWFRAGSSV TKLAVRRILN QGASYATRTR SIPSQTRSFH STICRPKAQS APVPRAVPLS KLTDSFLDGT SSVYLEELQR AWEADPNSVD ESWDNFFRNF
0101: VGQAATSPGI SGQTIQESMR LLLLVRAYQV NGHMKAKLDP LGLEQREIPE DLDLALYGFT EADLDREFFL GVWQMSGFMS ENRPVQTLRS ILTRLEQAYC
0201: GNIGFEYMHI ADRDKCNWLR EKIETPTPWR YNRERREVIL DRLAWSTQFE NFLATKWTTA KRFGLEGGES LIPGMKEMFD RAADLGVESI VIGMSHRGRL
0301: NVLGNVVRKP LRQIFSEFSG GIRPVDEVGY TGTGDVKYHL GTSYDRPTRG GKKIHLSLVA NPSHLEAADS VVVGKTRAKQ YYSNDLDRTK NLGILIHGDG
0401: SFAGQGVVYE TLHLSALPNY TTGGTIHIVV NNQVAFTTDP RAGRSSQYCT DVAKALSAPI FHVNGDDVEA VVHACELAAE WRQTFHSDVV VDLVCYRRFG
0501: HNEIDEPSFT QPKMYKVIKN HPSTLQIYHK KLLECGEVSQ QDIDRIQEKV NTILNEEFVA SKDYLPKKRD WLSTNWAGFK SPEQISRVRN TGVKPEILKT
0601: VGKAISSLPE NFKPHRAVKK VYEQRAQMIE SGEGVDWALA EALAFATLVV EGNHVRLSGQ DVERGTFSHR HSVLHDQETG EEYCPLDHLI MNQDPEMFTV
0701: SNSSLSEFGV LGFELGYSME SPNSLVLWEA QFGDFANGAQ VIFDQFISSG EAKWLRQTGL VMLLPHGYDG QGPEHSSARL ERYLQMSDDN PYVIPDMEPT
0801: MRKQIQECNW QIVNATTPAN YFHVLRRQIH RDFRKPLIVM APKNLLRHKD CKSNLSEFDD VQGHPGFDKQ GTRFKRLIKD QNDHSDLEEG IRRLVLCSGK
0901: VYYELDDERK KVGATDVAIC RVEQLCPFPY DLIQRELKRY PNAEIVWCQE EAMNMGAFSY ISPRLWTAMR SVNRGDMEDI KYVGRGPSAA TATGFYTFHV
1001: KEQAGLVQKA IGKEPIN

Arabidopsis Description

2-oxoglutarate dehydrogenase, E1 component [Source:UniProtKB/TrEMBL;Acc:F4IWV2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.