Factsheet for PGSC0003DMT400060466

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g054640.2.1	Tomato	nucleus, unclear	92.25	98.53
PGSC0003DMT400071319	Potato	mitochondrion	91.56	91.47
VIT_13s0019g00510.t01	Wine grape	mitochondrion	78.7	85.68
CDY08754	Canola	mitochondrion	75.56	85.18
CDY45626	Canola	mitochondrion	75.47	85.07
AT3G55410.2	Thale cress	mitochondrion	84.3	84.46
Bra024417.1-P	Field mustard	mitochondrion	83.91	84.32
CDY53693	Canola	mitochondrion	74.29	84.2
CDY62385	Canola	mitochondrion	74.29	84.2
AT5G65750.1	Thale cress	mitochondrion	84.4	83.9
CDY29088	Canola	cytosol, mitochondrion	73.99	83.87
CDY13078	Canola	cytosol, mitochondrion	73.9	83.76
Bra003211.1-P	Field mustard	mitochondrion	83.22	83.46
Bra027582.1-P	Field mustard	mitochondrion	82.73	82.73
Os04t0390000-02	Rice	mitochondrion	82.43	82.68
TraesCS2A01G284400.1	Wheat	nucleus	82.43	82.68
TraesCS2B01G301400.2	Wheat	unclear	82.43	82.68
TraesCS2D01G283300.2	Wheat	golgi	82.43	82.68
EES10635	Sorghum	mitochondrion	82.73	82.24
EES10634	Sorghum	mitochondrion	82.63	82.15
KRG90561	Soybean	mitochondrion	81.94	81.78
GSMUA_Achr5P28580_001	Banana	mitochondrion	70.95	81.6
KRH01603	Soybean	nucleus	82.04	81.56
Zm00001d025240_P002	Maize	mitochondrion	81.94	81.46
GSMUA_Achr10P...	Banana	mitochondrion	79.29	81.21
HORVU2Hr1G013170.1	Barley	mitochondrion	78.31	80.93
GSMUA_Achr8P02070_001	Banana	mitochondrion	76.94	80.74
KRH70503	Soybean	nucleus	81.45	80.66
Zm00001d003947_P005	Maize	mitochondrion	82.14	80.02
Os07t0695800-01	Rice	mitochondrion	78.21	79.07
TraesCS2A01G079500.1	Wheat	golgi	78.12	78.27
Zm00001d036328_P001	Maize	mitochondrion	77.92	78.15
TraesCS2D01G076900.1	Wheat	unclear	78.02	78.09
TraesCS2B01G094300.1	Wheat	mitochondrion	77.92	77.92
HORVU2Hr1G070090.1	Barley	mitochondrion	79.29	77.84
Zm00001d047592_P005	Maize	cytosol	12.66	72.07
KRH36194	Soybean	cytosol, mitochondrion	11.87	67.98
Zm00001d021330_P001	Maize	cytosol	8.44	50.89
Zm00001d023552_P001	Maize	plastid	9.32	49.22

Protein Annotations

KEGG:00020+1.2.4.2	KEGG:00310+1.2.4.2	KEGG:00380+1.2.4.2	Gene3D:1.10.287.1150	EntrezGene:102603826	InterPro:2-oxogl_dehyd_N
MapMan:2.3.4.1	InterPro:2oxoglutarate_DH_E1	Gene3D:3.40.50.11610	Gene3D:3.40.50.12470	Gene3D:3.40.50.970	InterPro:DH_E1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004591	GO:GO:0005488	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016624	GO:GO:0030976	GO:GO:0055114
InterPro:KGD_C	UniProt:M1C5X7	PFAM:PF00676	PFAM:PF02779	PFAM:PF16078	PFAM:PF16870
EnsemblPlantsGene:PGSC0003DMG400023519	PGSC:PGSC0003DMG400023519	EnsemblPlants:PGSC0003DMT400060466	PIRSF:PIRSF000157	PANTHER:PTHR23152	PANTHER:PTHR23152:SF4
SMART:SM00861	SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR00239	InterPro:Transketolase-like_Pyr-bd	UniParc:UPI0002964777
RefSeq:XP_006345940.1	:	:	:	:	:

Description

2-oxoglutarate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400023519]

Coordinates

chr5:+:50395499..50402243

Molecular Weight (calculated)

115366.0 Da

IEP (calculated)

6.992

GRAVY (calculated)

-0.431

Length

1019 amino acids

Sequence
(BLAST)

0001: MAWFRASSSV AKLAIRRALS QGGSYIPRTR ILPSQGRYFH TTVVRPKAQA APVPRPVPLS KLTDSFLDGT SSVYLEELQR AWEQDPNSVD ESWDNFFRNF
0101: VGQAATSPGI SGQTIQESMR LLLLVRAYQV NGHMKAKLDP LDLEAREIPD DLDPALYGFT EADLDREFFL GVWKMSGFLS ENRPVQTLKA ILTRLEQAYC
0201: GSIGYEYMHI SDRDKCNWLR ERIETPTSME YNRERREVIL DRLMWSTQFE NFLATKWAAA KRFGLEGCET LIPGMKEMFD RAADLGVESI VIGMPHRGRL
0301: NVLGNVVRKP LKQIFSEFSG GIKPGDDAGY VGTGDVKYHL GTSYDRPTRG GKRIHLSLVA NPSHLEAVDP VVIGKTRAKQ YYTNDENRTK SMGILLHGDG
0401: SFAGQGVVYE TLHLSALPNY TTGGTIHIVV NNQVAFTTDP TAGRSSQYCT DVAKALDIPI FHVNGDDVEA VAHVCELAAE WRQKFHADVV VDIVCYRRFG
0501: HNEIDEPSFT QPKMYKIIRN HPSSLEIYQN KLLNSGQVAK DDVEKIHNKI NRILNEEFIA SKDYVPQKRD WLSAFWSGFK SPSQLSRVRN TGVKPEILTN
0601: VGKAITTFPD GFKPHRALKR VFDDRRKMIE TGEGVDWAVG EALAFATLLV EGNHVRLSGQ DVERGTFSHR HSVIHDQETG AQYCPLDHVM MNQNEEMFTV
0701: SNSSLSEFGV LGFELGYSME NPNSLVIWEA QFGDFANGAQ VIFDQFVSSG EAKWLRQTGL VVLLPHGYDG QGPEHSSGRL ERFLQMSDDN PFVIPEMEPT
0801: LRKQIQECNW QVVNVTTPAN YFHVLRRQIH RDFRKPLIVM APKNLLRHKS CKSNLSEFDD VQGHPGFDKQ GTRFKRLIKD QKEHSDLEEG IRRLVLCSGK
0901: IYYELDEERA KADGKDIAIC RVEQLCPFPY DLIQRELKRY PNAEIVWCQE EPMNMGAFNY IAPRLSTAMK SLGRGNMDDI KYVGRAPSAA TATGFFQVHV
1001: KEQTELVQKA LQQDPINQF

Best Arabidopsis Sequence Match ( AT3G55410.1 )
(BLAST)

0001: MVWFRAGSSV TKLAVRRILN QGASYATRTR SIPSQTRSFH STICRPKAQS APVPRAVPLS KLTDSFLDGT SSVYLEELQR AWEADPNSVD ESWDNFFRNF
0101: VGQAATSPGI SGQTIQESMR LLLLVRAYQV NGHMKAKLDP LGLEQREIPE DLDLALYGFT EADLDREFFL GVWQMSGFMS ENRPVQTLRS ILTRLEQAYC
0201: GNIGFEYMHI ADRDKCNWLR EKIETPTPWR YNRERREVIL DRLAWSTQFE NFLATKWTTA KRFGLEGGES LIPGMKEMFD RAADLGVESI VIGMSHRGRL
0301: NVLGNVVRKP LRQIFSEFSG GIRPVDEVGY TGTGDVKYHL GTSYDRPTRG GKKIHLSLVA NPSHLEAADS VVVGKTRAKQ YYSNDLDRTK NLGILIHGDG
0401: SFAGQGVVYE TLHLSALPNY TTGGTIHIVV NNQVAFTTDP RAGRSSQYCT DVAKALSAPI FHVNGDDVEA VVHACELAAE WRQTFHSDVV VDLVCYRRFG
0501: HNEIDEPSFT QPKMYKVIKN HPSTLQIYHK KLLECGEVSQ QDIDRIQEKV NTILNEEFVA SKDYLPKKRD WLSTNWAGFK SPEQISRVRN TGVKPEILKT
0601: VGKAISSLPE NFKPHRAVKK VYEQRAQMIE SGEGVDWALA EALAFATLVV EGNHVRLSGQ DVERGTFSHR HSVLHDQETG EEYCPLDHLI MNQDPEMFTV
0701: SNSSLSEFGV LGFELGYSME SPNSLVLWEA QFGDFANGAQ VIFDQFISSG EAKWLRQTGL VMLLPHGYDG QGPEHSSARL ERYLQMSDDN PYVIPDMEPT
0801: MRKQIQECNW QIVNATTPAN YFHVLRRQIH RDFRKPLIVM APKNLLRHKD CKSNLSEFDD VQGHPGFDKQ GTRFKRLIKD QNDHSDLEEG IRRLVLCSGK
0901: VYYELDDERK KVGATDVAIC RVEQLCPFPY DLIQRELKRY PNAEIVWCQE EAMNMGAFSY ISPRLWTAMR SVNRGDMEDI KYVGRGPSAA TATGFYTFHV
1001: KEQAGLVQKA IGKEPIN

Arabidopsis Description

2-oxoglutarate dehydrogenase, E1 component [Source:UniProtKB/TrEMBL;Acc:F4IWV2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.