Factsheet for VIT_13s0019g00510.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P02070_001	Banana	mitochondrion	83.87	80.84
PGSC0003DMT400071319	Potato	mitochondrion	86.97	79.8
Solyc04g011350.2.1	Tomato	plastid	86.75	79.61
AT3G55410.2	Thale cress	mitochondrion	86.32	79.45
CDY62385	Canola	mitochondrion	75.64	78.75
PGSC0003DMT400060466	Potato	mitochondrion	85.68	78.7
KRG90561	Soybean	mitochondrion	85.79	78.65
CDY53693	Canola	mitochondrion	75.43	78.53
Bra003211.1-P	Field mustard	mitochondrion	85.15	78.44
Solyc05g054640.2.1	Tomato	nucleus, unclear	79.91	78.41
KRH01603	Soybean	nucleus	85.36	77.95
CDY29088	Canola	cytosol, mitochondrion	74.79	77.86
CDY13078	Canola	cytosol, mitochondrion	74.68	77.75
Bra024417.1-P	Field mustard	mitochondrion	84.08	77.61
Bra027582.1-P	Field mustard	mitochondrion	84.4	77.53
EES10635	Sorghum	mitochondrion	84.83	77.46
AT5G65750.1	Thale cress	mitochondrion	84.83	77.46
EES10634	Sorghum	mitochondrion	84.72	77.37
CDY45626	Canola	mitochondrion	74.57	77.21
Os04t0390000-02	Rice	mitochondrion	83.76	77.17
CDY08754	Canola	mitochondrion	74.47	77.1
Zm00001d025240_P002	Maize	mitochondrion	84.4	77.07
KRH70503	Soybean	nucleus	84.72	77.07
GSMUA_Achr5P28580_001	Banana	mitochondrion	72.86	76.98
TraesCS2B01G301400.2	Wheat	unclear	83.55	76.97
TraesCS2D01G283300.2	Wheat	golgi	83.44	76.87
TraesCS2A01G284400.1	Wheat	nucleus	83.44	76.87
GSMUA_Achr10P...	Banana	mitochondrion	80.88	76.08
Zm00001d047592_P005	Maize	cytosol	14.53	75.98
Zm00001d003947_P005	Maize	mitochondrion	84.08	75.24
HORVU2Hr1G013170.1	Barley	mitochondrion	78.42	74.44
KRH36194	Soybean	cytosol, mitochondrion	14.0	73.6
Os07t0695800-01	Rice	mitochondrion	78.63	73.02
HORVU2Hr1G070090.1	Barley	mitochondrion	80.66	72.74
Zm00001d036328_P001	Maize	mitochondrion	78.63	72.44
TraesCS2D01G076900.1	Wheat	unclear	78.53	72.2
TraesCS2A01G079500.1	Wheat	golgi	78.42	72.17
TraesCS2B01G094300.1	Wheat	mitochondrion	78.31	71.93
Zm00001d021330_P001	Maize	cytosol	9.62	53.25
Zm00001d023552_P001	Maize	plastid	9.62	46.63

Protein Annotations

KEGG:00020+1.2.4.2	KEGG:00310+1.2.4.2	KEGG:00380+1.2.4.2	Gene3D:1.10.287.1150	EntrezGene:100254754	wikigene:100254754
InterPro:2-oxogl_dehyd_N	MapMan:2.3.4.1	InterPro:2oxoglutarate_DH_E1	Gene3D:3.40.50.11610	Gene3D:3.40.50.12470	Gene3D:3.40.50.970
ProteinID:CCB56376	ProteinID:CCB56376.1	InterPro:DH_E1	UniProt:F6HN88	EMBL:FN595998	GO:GO:0003674
GO:GO:0003824	GO:GO:0004591	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016624	GO:GO:0030976	GO:GO:0045252	GO:GO:0055114	InterPro:KGD_C
EntrezGene:LOC100254754	wikigene:LOC100254754	PFAM:PF00676	PFAM:PF02779	PFAM:PF16078	PFAM:PF16870
PIRSF:PIRSF000157	PANTHER:PTHR23152	PANTHER:PTHR23152:SF4	SMART:SM00861	SUPFAM:SSF52518	TIGR:TC67130
InterPro:THDP-binding	TIGRFAMs:TIGR00239	InterPro:Transketolase-like_Pyr-bd	UniParc:UPI0002108538	ArrayExpress:VIT_13s0019g00510	EnsemblPlantsGene:VIT_13s0019g00510
EnsemblPlants:VIT_13s0019g00510.t01	RefSeq:XP_002279332	RefSeq:XP_002279332.2	:	:	:

Description

No Description!

Coordinates

chr13:-:2523872..2531229

Molecular Weight (calculated)

106550.0 Da

IEP (calculated)

6.953

GRAVY (calculated)

-0.454

Length

936 amino acids

Sequence
(BLAST)

001: MVWFRVGSGV GSVAKHAIRR TLCQGGSYAT RTRVLPSQNR YFHSTVLKSK AQAAPVPRPV PLSRLTDSFL DGTSSVYLEE LQRAWEADPN SVDESWDNFF
101: RNFVGQAATS PGISGQTIQE SMRLLLLVRA YQVNGHMKAK LDPLGLEERE IPDDLDPALY GFTEADLDRE FFLGVWRMAG FLSENRPVQT LRAILTRLEQ
201: AYCGSIGYEY MHIADRDKCN WLRDKIETPT PRQYNQQRRE VILDRLIWST QFENFLATKW TAAKRGGRRI HLSLVANPSH LEAVDPVVVG KTRAKQYYSN
301: DLDRTKNIGV LIHGDGSFAG QGVVYETLHL SALPNYTTGG TIHIVVNNQV AFTTDPRSGR SSQYCTDVAK ALNAPIFHVN GDDMEAVVHV CELAAEWRQT
401: FHSDVVVDVV CYRRFGHNEI DEPSFTQPKM YKVIRNHPSA LEIYQKKLLE LGQATQEDID RVQNKVNTIL NEEFLASKDY VPNRRDWLSA YWAGFKSPEQ
501: ISRVRNTGVR PEILKNVGKA ITTLPENFKA HRAVKKIFDL RAQMIETGEG IDWAVGEALA FATLLVEGNH VRLSGQDVER GTFSHRHSVI HDQETGERYC
601: PLDHVIMNQN EEMFTVSNSS LSEFGVLGFE LGYSMENPNA LVMWEAQFGD FANGAQVIFD QFLSSGESKW LRQTGLVVLL PHGYDGQGPE HSSARLERFL
701: QMSDDNPYVI PEMDPTLRKQ IQECNWQIVN VTTPANYFHV LRRQIHREFR KPLIVMSPKN LLRHKDCKSN LSEFDDVQGH PGFDKQGTRF KRLIKDQNDH
801: SSLEEGIRRL ILCSGKVYYE LDEQRKKVKA NDVAICRVEQ LCPFPYDLAQ RELKRYPNAE IVWCQEEPMN MGAYNYILPR LCTAMKEVDR GTVEDVKYVG
901: RAPSAATATG FSSLHTKEQT ELVQKALQPE PINYPF

Best Arabidopsis Sequence Match ( AT3G55410.1 )
(BLAST)

0001: MVWFRAGSSV TKLAVRRILN QGASYATRTR SIPSQTRSFH STICRPKAQS APVPRAVPLS KLTDSFLDGT SSVYLEELQR AWEADPNSVD ESWDNFFRNF
0101: VGQAATSPGI SGQTIQESMR LLLLVRAYQV NGHMKAKLDP LGLEQREIPE DLDLALYGFT EADLDREFFL GVWQMSGFMS ENRPVQTLRS ILTRLEQAYC
0201: GNIGFEYMHI ADRDKCNWLR EKIETPTPWR YNRERREVIL DRLAWSTQFE NFLATKWTTA KRFGLEGGES LIPGMKEMFD RAADLGVESI VIGMSHRGRL
0301: NVLGNVVRKP LRQIFSEFSG GIRPVDEVGY TGTGDVKYHL GTSYDRPTRG GKKIHLSLVA NPSHLEAADS VVVGKTRAKQ YYSNDLDRTK NLGILIHGDG
0401: SFAGQGVVYE TLHLSALPNY TTGGTIHIVV NNQVAFTTDP RAGRSSQYCT DVAKALSAPI FHVNGDDVEA VVHACELAAE WRQTFHSDVV VDLVCYRRFG
0501: HNEIDEPSFT QPKMYKVIKN HPSTLQIYHK KLLECGEVSQ QDIDRIQEKV NTILNEEFVA SKDYLPKKRD WLSTNWAGFK SPEQISRVRN TGVKPEILKT
0601: VGKAISSLPE NFKPHRAVKK VYEQRAQMIE SGEGVDWALA EALAFATLVV EGNHVRLSGQ DVERGTFSHR HSVLHDQETG EEYCPLDHLI MNQDPEMFTV
0701: SNSSLSEFGV LGFELGYSME SPNSLVLWEA QFGDFANGAQ VIFDQFISSG EAKWLRQTGL VMLLPHGYDG QGPEHSSARL ERYLQMSDDN PYVIPDMEPT
0801: MRKQIQECNW QIVNATTPAN YFHVLRRQIH RDFRKPLIVM APKNLLRHKD CKSNLSEFDD VQGHPGFDKQ GTRFKRLIKD QNDHSDLEEG IRRLVLCSGK
0901: VYYELDDERK KVGATDVAIC RVEQLCPFPY DLIQRELKRY PNAEIVWCQE EAMNMGAFSY ISPRLWTAMR SVNRGDMEDI KYVGRGPSAA TATGFYTFHV
1001: KEQAGLVQKA IGKEPIN

Arabidopsis Description

2-oxoglutarate dehydrogenase, E1 component [Source:UniProtKB/TrEMBL;Acc:F4IWV2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.