CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01603	Soybean	nucleus	89.23	88.88
KRH36194	Soybean	cytosol, mitochondrion	15.38	88.2
KRH70503	Soybean	nucleus	88.74	88.05
VIT_13s0019g00510.t01	Wine grape	mitochondrion	78.65	85.79
CDY62385	Canola	mitochondrion	73.85	83.87
CDY53693	Canola	mitochondrion	73.75	83.76
CDY29088	Canola	cytosol, mitochondrion	73.56	83.54
CDY13078	Canola	cytosol, mitochondrion	73.36	83.31
CDY45626	Canola	mitochondrion	73.46	82.96
CDY08754	Canola	mitochondrion	73.36	82.85
Solyc04g011350.2.1	Tomato	plastid	82.37	82.45
Bra003211.1-P	Field mustard	mitochondrion	81.88	82.28
PGSC0003DMT400071319	Potato	mitochondrion	82.17	82.25
AT3G55410.2	Thale cress	mitochondrion	81.78	82.1
PGSC0003DMT400060466	Potato	mitochondrion	81.78	81.94
Solyc05g054640.2.1	Tomato	nucleus, unclear	76.49	81.87
Bra024417.1-P	Field mustard	mitochondrion	81.29	81.85
GSMUA_Achr5P28580_001	Banana	mitochondrion	71.01	81.83
EES10634	Sorghum	mitochondrion	82.08	81.76
EES10635	Sorghum	mitochondrion	82.08	81.76
Os04t0390000-02	Rice	mitochondrion	81.29	81.69
AT5G65750.1	Thale cress	mitochondrion	81.98	81.66
TraesCS2A01G284400.1	Wheat	nucleus	80.9	81.3
TraesCS2B01G301400.2	Wheat	unclear	80.9	81.3
TraesCS2D01G283300.2	Wheat	golgi	80.8	81.2
Zm00001d025240_P002	Maize	mitochondrion	81.39	81.07
GSMUA_Achr10P...	Banana	mitochondrion	78.94	81.0
Bra027582.1-P	Field mustard	mitochondrion	80.71	80.86
GSMUA_Achr8P02070_001	Banana	mitochondrion	76.89	80.84
Zm00001d003947_P005	Maize	mitochondrion	81.88	79.92
HORVU2Hr1G013170.1	Barley	mitochondrion	76.89	79.61
Os07t0695800-01	Rice	mitochondrion	76.89	77.88
Zm00001d036328_P001	Maize	mitochondrion	76.69	77.07
TraesCS2A01G079500.1	Wheat	golgi	76.69	76.99
TraesCS2D01G076900.1	Wheat	unclear	76.69	76.92
HORVU2Hr1G070090.1	Barley	mitochondrion	78.16	76.88
TraesCS2B01G094300.1	Wheat	mitochondrion	76.59	76.74
Zm00001d047592_P005	Maize	cytosol	12.44	70.95
Zm00001d021330_P001	Maize	cytosol	8.52	51.48
Zm00001d023552_P001	Maize	plastid	9.21	48.7

Protein Annotations

KEGG:00020+1.2.4.2	KEGG:00310+1.2.4.2	KEGG:00380+1.2.4.2	Gene3D:1.10.287.1150	EntrezGene:100816277	InterPro:2-oxogl_dehyd_N
MapMan:2.3.4.1	InterPro:2oxoglutarate_DH_E1	Gene3D:3.40.50.11610	Gene3D:3.40.50.12470	Gene3D:3.40.50.970	EMBL:ACUP02012625
InterPro:DH_E1	EnsemblPlantsGene:GLYMA_20G099200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004591	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091
GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016624	GO:GO:0030976
GO:GO:0045252	GO:GO:0055114	UniProt:I1NF12	InterPro:KGD_C	EnsemblPlants:KRG90561	ProteinID:KRG90561
ProteinID:KRG90561.1	PFAM:PF00676	PFAM:PF02779	PFAM:PF16078	PFAM:PF16870	PIRSF:PIRSF000157
PANTHER:PTHR23152	PANTHER:PTHR23152:SF4	MetaCyc:PWY-5084	SMART:SM00861	SUPFAM:SSF52518	InterPro:THDP-binding
TIGRFAMs:TIGR00239	InterPro:Transketolase-like_Pyr-bd	UniParc:UPI000233DAC9	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:34241955..34247141

Molecular Weight (calculated)

116167.0 Da

IEP (calculated)

7.246

GRAVY (calculated)

-0.433

Length

1021 amino acids

Sequence
(BLAST)

0001: MAWFRVASSI VKHDAIRRNL YRGAKRTSTV LPSTSRIRKF HTTVVKSKEQ TAPVPRPVPL SKLTDNFLDG TSSVYLEELQ RAWEADPDSV DESWDNFFRN
0101: FVGQASTSPG ISGQTIQESM QLLLLVRAYQ VNGHMKAKLD PLGLEERKVP DELDPAFYGF TEADLDREFF LGVWKMSGFL SENRPVQTLR FILSRLQQAY
0201: CGSIGYEYMH IPDREKCNWL RDRIETPTPT QYNRERREVI FDRLAWSTLF ENFLATKWTS AKRFGLEGGE SVIPGMKEMF DRASDLGVES IVMGMAHRGR
0301: LNVLGNVVRK PLRQIFCEFS GGQPADEVGL YTGTGDVKYH LGTSYDRPTR GGRRIHLSLV ANPSHLEAVN PLVVGKTRAK QYYSNDVDRM KNMGVLIHGD
0401: GSFAGQGVVY ETLHLSALPN YTTGGTIHIV FNNQVAFTTD PKSGRSSQYC TDVAKALNAP IFHVNGDDVE AVVHVCELAA EWRQTFHSDV VVDFVCYRRF
0501: GHNEIDEPSF TQPKMYKVIR NHPSALEIYQ KKLLESGELT QEDIDKIHKK VTSILNDEFL ASKDYVPKRR DWLSAYWSGF KSPEQISRIR NTGVKPEILK
0601: SVGKAITILP KFFSPHKAVK RIYEQRAQMV ETGEDIDWGF AEALAFATLI VEGNHVRLSG QDVERGTFSH RHAVVHDQTT GEIYCPLDHV IMNQNEEMFT
0701: VSNSSLSEFG VLGFELGYSM ENPNSLVIWE AQFGDFANGA QVIFDNFLSS GESKWLRQTG LVVLLPHGYD GQGPEHSSGR LERFLQMADD HPYVIPEMDP
0801: TLRKQIQECN WQIVNVTTPA NFFHVLRRQI HREFRKPLIV MSPKNLLRSK ACRSNLSEFD DVQGHPGFDK QGTRFKRLIK DQNNHSDVEE GIRRLVLCSG
0901: KVYYELDEQR TKEDAKDVAI CRVEQLCPFP YDLVQRELKR YPNAEVVWCQ EEPMNMGGYT YILPRLISSM KAVGRGGYED VKYVGRAPSA ATATGFLKVH
1001: LNEQAELVQK AIQREPINFP Y

Best Arabidopsis Sequence Match ( AT3G55410.1 )
(BLAST)

0001: MVWFRAGSSV TKLAVRRILN QGASYATRTR SIPSQTRSFH STICRPKAQS APVPRAVPLS KLTDSFLDGT SSVYLEELQR AWEADPNSVD ESWDNFFRNF
0101: VGQAATSPGI SGQTIQESMR LLLLVRAYQV NGHMKAKLDP LGLEQREIPE DLDLALYGFT EADLDREFFL GVWQMSGFMS ENRPVQTLRS ILTRLEQAYC
0201: GNIGFEYMHI ADRDKCNWLR EKIETPTPWR YNRERREVIL DRLAWSTQFE NFLATKWTTA KRFGLEGGES LIPGMKEMFD RAADLGVESI VIGMSHRGRL
0301: NVLGNVVRKP LRQIFSEFSG GIRPVDEVGY TGTGDVKYHL GTSYDRPTRG GKKIHLSLVA NPSHLEAADS VVVGKTRAKQ YYSNDLDRTK NLGILIHGDG
0401: SFAGQGVVYE TLHLSALPNY TTGGTIHIVV NNQVAFTTDP RAGRSSQYCT DVAKALSAPI FHVNGDDVEA VVHACELAAE WRQTFHSDVV VDLVCYRRFG
0501: HNEIDEPSFT QPKMYKVIKN HPSTLQIYHK KLLECGEVSQ QDIDRIQEKV NTILNEEFVA SKDYLPKKRD WLSTNWAGFK SPEQISRVRN TGVKPEILKT
0601: VGKAISSLPE NFKPHRAVKK VYEQRAQMIE SGEGVDWALA EALAFATLVV EGNHVRLSGQ DVERGTFSHR HSVLHDQETG EEYCPLDHLI MNQDPEMFTV
0701: SNSSLSEFGV LGFELGYSME SPNSLVLWEA QFGDFANGAQ VIFDQFISSG EAKWLRQTGL VMLLPHGYDG QGPEHSSARL ERYLQMSDDN PYVIPDMEPT
0801: MRKQIQECNW QIVNATTPAN YFHVLRRQIH RDFRKPLIVM APKNLLRHKD CKSNLSEFDD VQGHPGFDKQ GTRFKRLIKD QNDHSDLEEG IRRLVLCSGK
0901: VYYELDDERK KVGATDVAIC RVEQLCPFPY DLIQRELKRY PNAEIVWCQE EAMNMGAFSY ISPRLWTAMR SVNRGDMEDI KYVGRGPSAA TATGFYTFHV
1001: KEQAGLVQKA IGKEPIN

Arabidopsis Description

2-oxoglutarate dehydrogenase, E1 component [Source:UniProtKB/TrEMBL;Acc:F4IWV2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.