CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53693	Canola	mitochondrion	99.56	99.56
CDY29088	Canola	cytosol, mitochondrion	98.67	98.67
CDY13078	Canola	cytosol, mitochondrion	98.55	98.55
AT3G55410.2	Thale cress	mitochondrion	97.89	86.53
CDY45626	Canola	mitochondrion	86.87	86.39
CDY08754	Canola	mitochondrion	86.54	86.06
HORVU2Hr1G013170.1	Barley	mitochondrion	84.43	76.98
VIT_13s0019g00510.t01	Wine grape	mitochondrion	78.75	75.64
Solyc04g011350.2.1	Tomato	plastid	85.65	75.49
PGSC0003DMT400071319	Potato	mitochondrion	85.54	75.39
GSMUA_Achr5P28580_001	Banana	mitochondrion	73.97	75.06
TraesCS2D01G283300.2	Wheat	golgi	84.32	74.61
TraesCS2B01G301400.2	Wheat	unclear	84.32	74.61
TraesCS2A01G284400.1	Wheat	nucleus	84.32	74.61
Os07t0695800-01	Rice	mitochondrion	83.43	74.4
TraesCS2A01G079500.1	Wheat	golgi	84.09	74.34
PGSC0003DMT400060466	Potato	mitochondrion	84.2	74.29
TraesCS2D01G076900.1	Wheat	unclear	84.09	74.26
Zm00001d036328_P001	Maize	mitochondrion	83.87	74.21
Os04t0390000-02	Rice	mitochondrion	83.87	74.21
TraesCS2B01G094300.1	Wheat	mitochondrion	83.98	74.09
EES10635	Sorghum	mitochondrion	84.32	73.95
Zm00001d025240_P002	Maize	mitochondrion	84.2	73.85
KRG90561	Soybean	mitochondrion	83.87	73.85
EES10634	Sorghum	mitochondrion	84.09	73.76
KRH01603	Soybean	nucleus	83.98	73.66
GSMUA_Achr10P...	Banana	mitochondrion	81.2	73.37
Zm00001d047592_P005	Maize	cytosol	14.57	73.18
Solyc05g054640.2.1	Tomato	nucleus, unclear	77.53	73.06
KRH70503	Soybean	nucleus	83.54	72.98
Zm00001d003947_P005	Maize	mitochondrion	84.09	72.28
GSMUA_Achr8P02070_001	Banana	mitochondrion	77.98	72.19
HORVU2Hr1G070090.1	Barley	mitochondrion	82.87	71.77
KRH36194	Soybean	cytosol, mitochondrion	13.35	67.42
Zm00001d023552_P001	Maize	plastid	10.9	50.78
Zm00001d021330_P001	Maize	cytosol	9.45	50.3

Protein Annotations

KEGG:00020+1.2.4.2	KEGG:00310+1.2.4.2	KEGG:00380+1.2.4.2	Gene3D:1.10.287.1150	MapMan:2.3.4.1	InterPro:2oxoglutarate_DH_E1
Gene3D:3.40.50.11610	Gene3D:3.40.50.12470	Gene3D:3.40.50.970	GO:A0A078J716	UniProt:A0A078J716	EnsemblPlants:CDY62385
ProteinID:CDY62385	ProteinID:CDY62385.1	InterPro:DH_E1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004591
GO:GO:0005488	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016624	GO:GO:0030976	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00036221001	InterPro:KGD_C	PFAM:PF00676
PFAM:PF02779	PFAM:PF16870	PIRSF:PIRSF000157	PANTHER:PTHR23152	PANTHER:PTHR23152:SF4	MetaCyc:PWY-5084
SMART:SM00861	SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR00239	InterPro:Transketolase-like_Pyr-bd	UniParc:UPI0004EE8A80

Description

BnaCnng40160DBnaCnng40160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J716]

Coordinates

chrLK034136:+:10811..14260

Molecular Weight (calculated)

102208.0 Da

IEP (calculated)

6.775

GRAVY (calculated)

-0.443

Length

899 amino acids

Sequence
(BLAST)

001: MRLLLLVRAY QVNGHMKAKL DPLGLEQREI PEDLDLALYG FTEADLDREF FLGVWQMSGF MSENRPVQTL RSILTRLQQA YCGSIGFEYM HIADRDKCNW
101: LREKIETPTP WRYNRERREV ILDRLAWSTQ FENFLATKWT TAKRFGLEGG ESLIPGMKEM FDRAADLGVE SIVIGMSHRG RLNVLGNVVR KPLRQIFSEF
201: SGGIRPVDEV GYTGTGDVKY HLGTSYDRPT RGGKKIHLSL VANPSHLEAA DSVVVGKTRA KQYYSKDLDR TKNLGILIHG DGSFAGQGVV YETLHLSALP
301: NYTTGGTIHI VVNNQVAFTT DPRAGRSSQY CTDVAKALSA PIFHVNGDDV EAVVHACELA AEWRQTFHSD VVVDLVCYRR FGHNEIDEPS FTQPKMYKVI
401: KNHPSTLQIY HKKLLECGEI SQQDIDRIQE KVNTILNEEF VASKDYLSKT RDWLSTNWAG FKSPEQISRV RNTGVKPEIL KTVGKAISSL PENFKPHRAV
501: KKVYEQRAQM IETGEGIDWA LAEALAFATL VVEGNHVRLS GQDVERGTFS HRHSVLHDQE TGEEYCPLDH LVMNQDPEMF TVSNSSLSEF GVLGFELGYS
601: MESPNSLVLW EAQFGDFANG AQVIFDQFIS SGEAKWLRQT GLVVLLPHGY DGQGPEHSSA RLERYLQMSD DNPYVIPDME PTLRKQIQEC NWQIVNATTP
701: ANYFHVLRRQ LHRDFRKPLI VMAPKNLLRH KDCKSNLSEF DDVQGHPGFD KQGTRFKRLI KDQNDHSDLE EGIRRLVLCS GKVYYELDDE RKKVGASDVA
801: ICRVEQLCPF PYDLIQRELK RYPNAEIVWC QEEAMNMGAY SYITPRLWTA MRSLRRGDME DIKYVGRGPS AATATGFYTF HVKEQAELVQ KAIGKEPIS

Best Arabidopsis Sequence Match ( AT3G55410.1 )
(BLAST)

0001: MVWFRAGSSV TKLAVRRILN QGASYATRTR SIPSQTRSFH STICRPKAQS APVPRAVPLS KLTDSFLDGT SSVYLEELQR AWEADPNSVD ESWDNFFRNF
0101: VGQAATSPGI SGQTIQESMR LLLLVRAYQV NGHMKAKLDP LGLEQREIPE DLDLALYGFT EADLDREFFL GVWQMSGFMS ENRPVQTLRS ILTRLEQAYC
0201: GNIGFEYMHI ADRDKCNWLR EKIETPTPWR YNRERREVIL DRLAWSTQFE NFLATKWTTA KRFGLEGGES LIPGMKEMFD RAADLGVESI VIGMSHRGRL
0301: NVLGNVVRKP LRQIFSEFSG GIRPVDEVGY TGTGDVKYHL GTSYDRPTRG GKKIHLSLVA NPSHLEAADS VVVGKTRAKQ YYSNDLDRTK NLGILIHGDG
0401: SFAGQGVVYE TLHLSALPNY TTGGTIHIVV NNQVAFTTDP RAGRSSQYCT DVAKALSAPI FHVNGDDVEA VVHACELAAE WRQTFHSDVV VDLVCYRRFG
0501: HNEIDEPSFT QPKMYKVIKN HPSTLQIYHK KLLECGEVSQ QDIDRIQEKV NTILNEEFVA SKDYLPKKRD WLSTNWAGFK SPEQISRVRN TGVKPEILKT
0601: VGKAISSLPE NFKPHRAVKK VYEQRAQMIE SGEGVDWALA EALAFATLVV EGNHVRLSGQ DVERGTFSHR HSVLHDQETG EEYCPLDHLI MNQDPEMFTV
0701: SNSSLSEFGV LGFELGYSME SPNSLVLWEA QFGDFANGAQ VIFDQFISSG EAKWLRQTGL VMLLPHGYDG QGPEHSSARL ERYLQMSDDN PYVIPDMEPT
0801: MRKQIQECNW QIVNATTPAN YFHVLRRQIH RDFRKPLIVM APKNLLRHKD CKSNLSEFDD VQGHPGFDKQ GTRFKRLIKD QNDHSDLEEG IRRLVLCSGK
0901: VYYELDDERK KVGATDVAIC RVEQLCPFPY DLIQRELKRY PNAEIVWCQE EAMNMGAFSY ISPRLWTAMR SVNRGDMEDI KYVGRGPSAA TATGFYTFHV
1001: KEQAGLVQKA IGKEPIN

Arabidopsis Description

2-oxoglutarate dehydrogenase, E1 component [Source:UniProtKB/TrEMBL;Acc:F4IWV2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.