Factsheet for TraesCS2A01G284400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G301400.2	Wheat	unclear	99.8	99.8
TraesCS2D01G283300.2	Wheat	golgi	99.8	99.8
Os04t0390000-02	Rice	mitochondrion	94.29	94.29
EES10635	Sorghum	mitochondrion	94.19	93.37
EES10634	Sorghum	mitochondrion	94.19	93.37
Zm00001d025240_P002	Maize	mitochondrion	93.6	92.78
HORVU2Hr1G070090.1	Barley	mitochondrion	93.5	91.52
Zm00001d003947_P005	Maize	mitochondrion	93.6	90.92
CDY45626	Canola	mitochondrion	75.3	84.62
CDY53693	Canola	mitochondrion	74.7	84.43
GSMUA_Achr10P...	Banana	mitochondrion	82.68	84.42
CDY08754	Canola	mitochondrion	75.1	84.4
CDY62385	Canola	mitochondrion	74.61	84.32
CDY29088	Canola	cytosol, mitochondrion	74.11	83.76
CDY13078	Canola	cytosol, mitochondrion	74.11	83.76
VIT_13s0019g00510.t01	Wine grape	mitochondrion	76.87	83.44
PGSC0003DMT400071319	Potato	mitochondrion	83.76	83.43
Solyc04g011350.2.1	Tomato	plastid	83.76	83.43
Bra024417.1-P	Field mustard	mitochondrion	82.78	82.94
Solyc05g054640.2.1	Tomato	nucleus, unclear	77.56	82.6
Bra003211.1-P	Field mustard	mitochondrion	82.48	82.48
PGSC0003DMT400060466	Potato	mitochondrion	82.68	82.43
AT5G65750.1	Thale cress	mitochondrion	82.87	82.15
AT3G55410.2	Thale cress	mitochondrion	81.99	81.91
Bra027582.1-P	Field mustard	mitochondrion	81.4	81.16
KRG90561	Soybean	mitochondrion	81.3	80.9
TraesCS2A01G079500.1	Wheat	golgi	80.71	80.63
KRH01603	Soybean	nucleus	81.0	80.29
KRH70503	Soybean	nucleus	80.61	79.59
KRH36194	Soybean	cytosol, mitochondrion	12.4	70.79
Zm00001d023552_P001	Maize	plastid	9.84	51.81

Protein Annotations

KEGG:00020+1.2.4.2	KEGG:00310+1.2.4.2	KEGG:00380+1.2.4.2	Gene3D:1.10.287.1150	InterPro:2-oxogl_dehyd_N	MapMan:2.3.4.1
InterPro:2oxoglutarate_DH_E1	Gene3D:3.40.50.11610	Gene3D:3.40.50.12470	Gene3D:3.40.50.970	InterPro:DH_E1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004591	GO:GO:0005488	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016624	GO:GO:0030976	GO:GO:0055114	InterPro:KGD_C
PFAM:PF00676	PFAM:PF02779	PFAM:PF16078	PFAM:PF16870	PIRSF:PIRSF000157	PANTHER:PTHR23152
PANTHER:PTHR23152:SF4	SMART:SM00861	SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR00239	EnsemblPlantsGene:TraesCS2A01G284400
EnsemblPlants:TraesCS2A01G284400.1	InterPro:Transketolase-like_Pyr-bd	TIGR:cd02016	SEG:seg	:	:

Description

No Description!

Coordinates

chr2A:+:477002980..477008661

Molecular Weight (calculated)

115242.0 Da

IEP (calculated)

6.992

GRAVY (calculated)

-0.458

Length

1016 amino acids

Sequence
(BLAST)

0001: MGLFRAASGL ARVALRRSLS RAPASPFAGP APRYFHSTLP RRYAAPEPRA VPLSRLTDSF LDGTSSVYLE ELQRAWEADP TSVDESWDNF FRNFVGQAAT
0101: SPGISGQTIQ ESMRLLLLVR AYQVSGHMKA KLDPLGLEQR AVPDVLDPAF YGFSESDLDR EFFLGVWRMA GFLSENRPVQ TLRSVLGRLE QAYCGTIGYE
0201: YMHIPDREKC NWLRERIETV NPREYTYDRR QVMLDRLIWS TQFENFLAQK WTTAKRFGLE GAETLIPGMK EMFDRAADLG VESIVIGMPH RGRLNVLGNV
0301: VRKPLRQIFS EFSGGTKPVN EGEGLYTGTG DVKYHLGTSY DRPTRGGKHI HLSLVANPSH LEAVDPVVAG KTRAKQYYSN DLDRTKNLGV LLHGDGSFSG
0401: QGVVYETLHL SALPNYTTGG TIHLVVNNQV AFTTDPMSGR SSQYCTDVAK ALDAPIFHVN GDDLEAVVHT CELAAEWRQT FHSDVVVDIV CYRRFGHNEI
0501: DEPSFTQPKM YKVIRNHPSA LEIYQNQLLE SGKISKEDID KIHKKVSTIL NEEFKKSKDD IPNKRDWLSA YWTGFKSPEQ ISRIRNTGVK PEILKRVGEA
0601: MTTLPETFKP HRAVKKIFDL RRQMIETGEG IDWAVGEALA FATLIIEGNH VRLSGQDVER GTFSHRHSVI HDQETGEQYC PLDNLVMNQN EELFTVSNSS
0701: LSEFAVLGFE LGYSMENPNS LVLWEAQFGD FSNGAQVIFD QFISSGEAKW LRQTGLVVCL PHGYDGQGPE HSSARMERFL QMSDDNPYVI PEMDPTLRKQ
0801: IQECNWQVVN VTTPANYFHV LRRQIHRDFR KPLIVMSPKN LLRHKDCKSS LSEFDDLAGH PGFDKQGTRF KRLIKDRNDH KDLEEGIRRL VLCSGKVYYE
0901: LDEERKKSDS NDVAICRVEQ LCPFPYDLIQ RELKRYPNAE IVWCQEEPMN MGAYTYINPR LLTAMRALGR GSIDDIKYVG RAPSAATATG FYTVHVQEQT
1001: ELVKKALQRD PIKSPL

Best Arabidopsis Sequence Match ( AT5G65750.1 )
(BLAST)

0001: MVWFRIGSSV AKLAIRRTLS QSRCGSYATR TRVLPCQTRC FHSTILKSKA ESAAPVPRPV PLSKLTDSFL DGTSSVYLEE LQRAWEADPN SVDESWDNFF
0101: RNFVGQASTS PGISGQTIQE SMRLLLLVRA YQVNGHMKAK LDPLGLEKRE IPEDLTPGLY GFTEADLDRE FFLGVWRMSG FLSENRPVQT LRSILSRLEQ
0201: AYCGTIGYEY MHIADRDKCN WLRDKIETPT PRQYNSERRM VIYDRLTWST QFENFLATKW TTAKRFGLEG AESLIPGMKE MFDRSADLGV ENIVIGMPHR
0301: GRLNVLGNVV RKPLRQIFSE FSGGTRPVDE VGLYTGTGDV KYHLGTSYDR PTRGGKHLHL SLVANPSHLE AVDPVVIGKT RAKQYYTKDE NRTKNMGILI
0401: HGDGSFAGQG VVYETLHLSA LPNYCTGGTV HIVVNNQVAF TTDPREGRSS QYCTDVAKAL SAPIFHVNAD DIEAVVHACE LAAEWRQTFH SDVVVDLVCY
0501: RRFGHNEIDE PSFTQPKMYK VIRSHPSSLQ IYQEKLLQSG QVTQEDIDKI QKKVSSILNE EYEASKDYIP QKRDWLASHW TGFKSPEQIS RIRNTGVKPE
0601: ILKNVGKAIS TFPENFKPHR GVKRVYEQRA QMIESGEGID WGLGEALAFA TLVVEGNHVR LSGQDVERGT FSHRHSVLHD QETGEEYCPL DHLIKNQDPE
0701: MFTVSNSSLS EFGVLGFELG YSMENPNSLV IWEAQFGDFA NGAQVMFDQF ISSGEAKWLR QTGLVVLLPH GYDGQGPEHS SGRLERFLQM SDDNPYVIPE
0801: MDPTLRKQIQ ECNWQVVNVT TPANYFHVLR RQIHRDFRKP LIVMAPKNLL RHKQCVSNLS EFDDVKGHPG FDKQGTRFKR LIKDQSGHSD LEEGIRRLVL
0901: CSGKVYYELD EERKKSETKD VAICRVEQLC PFPYDLIQRE LKRYPNAEIV WCQEEPMNMG GYQYIALRLC TAMKALQRGN FNDIKYVGRL PSAATATGFY
1001: QLHVKEQTDL VKKALQPDPI TPVIP

Arabidopsis Description

2-oxoglutarate dehydrogenase, E1 component [Source:UniProtKB/TrEMBL;Acc:Q9FLH2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.