CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164
mitochondrion: 27780359
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70503	Soybean	nucleus	97.85	97.47
KRG90561	Soybean	mitochondrion	88.88	89.23
VIT_13s0019g00510.t01	Wine grape	mitochondrion	77.95	85.36
CDY62385	Canola	mitochondrion	73.66	83.98
CDY45626	Canola	mitochondrion	74.05	83.96
CDY53693	Canola	mitochondrion	73.56	83.87
CDY08754	Canola	mitochondrion	73.76	83.63
CDY13078	Canola	cytosol, mitochondrion	72.98	83.2
CDY29088	Canola	cytosol, mitochondrion	72.98	83.2
Bra024417.1-P	Field mustard	mitochondrion	82.15	83.04
AT3G55410.2	Thale cress	mitochondrion	82.24	82.89
Solyc04g011350.2.1	Tomato	plastid	82.44	82.84
Bra003211.1-P	Field mustard	mitochondrion	81.95	82.68
AT5G65750.1	Thale cress	mitochondrion	82.44	82.44
GSMUA_Achr5P28580_001	Banana	mitochondrion	71.12	82.28
PGSC0003DMT400071319	Potato	mitochondrion	81.85	82.25
Solyc05g054640.2.1	Tomato	nucleus, unclear	76.49	82.18
PGSC0003DMT400060466	Potato	mitochondrion	81.56	82.04
Bra027582.1-P	Field mustard	mitochondrion	80.98	81.45
Os04t0390000-02	Rice	mitochondrion	80.59	81.3
TraesCS2B01G301400.2	Wheat	unclear	80.39	81.1
TraesCS2D01G283300.2	Wheat	golgi	80.29	81.0
TraesCS2A01G284400.1	Wheat	nucleus	80.29	81.0
GSMUA_Achr10P...	Banana	mitochondrion	78.54	80.9
EES10635	Sorghum	mitochondrion	80.59	80.59
EES10634	Sorghum	mitochondrion	80.59	80.59
GSMUA_Achr8P02070_001	Banana	mitochondrion	76.1	80.33
Zm00001d025240_P002	Maize	mitochondrion	79.9	79.9
HORVU2Hr1G013170.1	Barley	mitochondrion	76.0	79.01
Zm00001d003947_P005	Maize	mitochondrion	80.29	78.68
KRH36194	Soybean	cytosol, mitochondrion	13.56	78.09
Os07t0695800-01	Rice	mitochondrion	76.2	77.48
HORVU2Hr1G070090.1	Barley	mitochondrion	77.95	76.97
Zm00001d036328_P001	Maize	mitochondrion	75.71	76.38
TraesCS2B01G094300.1	Wheat	mitochondrion	75.9	76.35
TraesCS2D01G076900.1	Wheat	unclear	75.8	76.33
TraesCS2A01G079500.1	Wheat	golgi	75.71	76.3
Zm00001d047592_P005	Maize	cytosol	12.29	70.39
Zm00001d021330_P001	Maize	cytosol	8.1	49.11
Zm00001d023552_P001	Maize	plastid	9.17	48.7

Protein Annotations

KEGG:00020+1.2.4.2	KEGG:00310+1.2.4.2	KEGG:00380+1.2.4.2	Gene3D:1.10.287.1150	EntrezGene:100781680	InterPro:2-oxogl_dehyd_N
MapMan:2.3.4.1	InterPro:2oxoglutarate_DH_E1	Gene3D:3.40.50.11610	Gene3D:3.40.50.12470	Gene3D:3.40.50.970	EMBL:ACUP02011523
InterPro:DH_E1	EnsemblPlantsGene:GLYMA_18G287400	GO:GO:0003674	GO:GO:0003824	GO:GO:0004591	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091
GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016624	GO:GO:0030976
GO:GO:0045252	GO:GO:0055114	UniProt:K7MVB9	InterPro:KGD_C	ProteinID:KRH01602.1	EnsemblPlants:KRH01603
ProteinID:KRH01603	ProteinID:KRH01603.1	PFAM:PF00676	PFAM:PF02779	PFAM:PF16078	PFAM:PF16870
PIRSF:PIRSF000157	PANTHER:PTHR23152	PANTHER:PTHR23152:SF4	MetaCyc:PWY-5084	SMART:SM00861	SUPFAM:SSF52518
InterPro:THDP-binding	TIGRFAMs:TIGR00239	InterPro:Transketolase-like_Pyr-bd	UniParc:UPI000233F12E	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:-:56740754..56748259

Molecular Weight (calculated)

116123.0 Da

IEP (calculated)

6.849

GRAVY (calculated)

-0.421

Length

1025 amino acids

Sequence
(BLAST)

0001: MAWFRAGASI AKHAIRRTLS KGGSTHLVSR ARVLPSIPSS HSRSFHSSVF KEQAAPVPRA VPLSKLTDSF LDGTSSVYLE ELQRAWEADP NSVDESWDNF
0101: FRNFVGQATT SPGISGQTIH ESMRLLLLVR AYQVNGHMKA KLDPLNLEPR EIPEDLDPAL YGFTEADLDR EFFLGVWRMA GFLSENRPVQ TLRSILTRLE
0201: QAYCGSIGYE YMHIADRHKC NWLRDRIETP TPTQFNRERR EAIFDRLAWS SLFENFLATK WTSAKRFGLE GGETLIPGMK EMFDRASDLG VESIVIGMAH
0301: RGRLNVLGNV VRKPLRQIFC EFSGGLQPEG EVGLYTGTGD VKYHLGTSYD RPTRGGKRIH LSLVANPSHL EAVNPVVVGK TRAKQYYSND VDRTKNMGVL
0401: IHGDGSFAGQ GVVYETLHLS ALPNYTTGGT IHIVFNNQVA FTTDPTSGRS SQYCTDVAKA LDAPIFHVNG DDVEAVVHAC ELAAEWRQTF HSDVVVDLVC
0501: YRRFGHNEID EPSFTQPKMY KVIRSHPSTL EIYEKKLLES GELTQEEIDR IHKKVTSILN EEFLASKEYI PKRRDWLSAY WLGFKSPEQL SRIRNTGVKP
0601: EILKNVGKAI TTIPENFTPH RAVKRIYEQR AQMIETGEDI DWGFAEALAY ATLLIEGNHV RLSGQDVERG TFSHRHAVVH DQTTGEKYCP LDNVIMNQDE
0701: EMFTVSNSSL SEFGVLGFEL GYSMENPNSL IIWEAQFGDF ANGAHVIFDN FLASGEAKWL RQTGLVVLLP HGYDGQGPEH SSARLERFLQ MADDNPHVIP
0801: EMDPTLRKQI QECNLQIVNV TTPANFFHVL RRQVHREFRK PLIVMSPKNL LRSKACRSNL SEFDDVQGHP GFDKQGTRFK RLIKDQNEHK DVEEGIRRLV
0901: LCSGKVYYEL DEHRTKVDAK DVAICRVEQL CPFPYDLVQR ELKRYPNAEV VWCQEEPMNM GGYTYILPRL ISSMKAVNRG GYDDVKYVGR APSAATATGF
1001: LKVHQKEQTE IAEKALQQEP IDFPF

Best Arabidopsis Sequence Match ( AT5G65750.1 )
(BLAST)

0001: MVWFRIGSSV AKLAIRRTLS QSRCGSYATR TRVLPCQTRC FHSTILKSKA ESAAPVPRPV PLSKLTDSFL DGTSSVYLEE LQRAWEADPN SVDESWDNFF
0101: RNFVGQASTS PGISGQTIQE SMRLLLLVRA YQVNGHMKAK LDPLGLEKRE IPEDLTPGLY GFTEADLDRE FFLGVWRMSG FLSENRPVQT LRSILSRLEQ
0201: AYCGTIGYEY MHIADRDKCN WLRDKIETPT PRQYNSERRM VIYDRLTWST QFENFLATKW TTAKRFGLEG AESLIPGMKE MFDRSADLGV ENIVIGMPHR
0301: GRLNVLGNVV RKPLRQIFSE FSGGTRPVDE VGLYTGTGDV KYHLGTSYDR PTRGGKHLHL SLVANPSHLE AVDPVVIGKT RAKQYYTKDE NRTKNMGILI
0401: HGDGSFAGQG VVYETLHLSA LPNYCTGGTV HIVVNNQVAF TTDPREGRSS QYCTDVAKAL SAPIFHVNAD DIEAVVHACE LAAEWRQTFH SDVVVDLVCY
0501: RRFGHNEIDE PSFTQPKMYK VIRSHPSSLQ IYQEKLLQSG QVTQEDIDKI QKKVSSILNE EYEASKDYIP QKRDWLASHW TGFKSPEQIS RIRNTGVKPE
0601: ILKNVGKAIS TFPENFKPHR GVKRVYEQRA QMIESGEGID WGLGEALAFA TLVVEGNHVR LSGQDVERGT FSHRHSVLHD QETGEEYCPL DHLIKNQDPE
0701: MFTVSNSSLS EFGVLGFELG YSMENPNSLV IWEAQFGDFA NGAQVMFDQF ISSGEAKWLR QTGLVVLLPH GYDGQGPEHS SGRLERFLQM SDDNPYVIPE
0801: MDPTLRKQIQ ECNWQVVNVT TPANYFHVLR RQIHRDFRKP LIVMAPKNLL RHKQCVSNLS EFDDVKGHPG FDKQGTRFKR LIKDQSGHSD LEEGIRRLVL
0901: CSGKVYYELD EERKKSETKD VAICRVEQLC PFPYDLIQRE LKRYPNAEIV WCQEEPMNMG GYQYIALRLC TAMKALQRGN FNDIKYVGRL PSAATATGFY
1001: QLHVKEQTDL VKKALQPDPI TPVIP

Arabidopsis Description

2-oxoglutarate dehydrogenase, E1 component [Source:UniProtKB/TrEMBL;Acc:Q9FLH2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.