Factsheet for Zm00001d025240_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10635	Sorghum	mitochondrion	97.46	97.46
EES10634	Sorghum	mitochondrion	97.27	97.27
Zm00001d003947_P005	Maize	mitochondrion	97.56	95.6
Os04t0390000-02	Rice	mitochondrion	94.24	95.08
TraesCS2B01G301400.2	Wheat	unclear	92.98	93.8
TraesCS2A01G284400.1	Wheat	nucleus	92.78	93.6
TraesCS2D01G283300.2	Wheat	golgi	92.78	93.6
HORVU2Hr1G070090.1	Barley	mitochondrion	88.2	87.09
GSMUA_Achr10P...	Banana	mitochondrion	82.44	84.92
CDY45626	Canola	mitochondrion	74.44	84.4
VIT_13s0019g00510.t01	Wine grape	mitochondrion	77.07	84.4
CDY08754	Canola	mitochondrion	74.34	84.29
CDY53693	Canola	mitochondrion	73.85	84.2
CDY62385	Canola	mitochondrion	73.85	84.2
CDY29088	Canola	cytosol, mitochondrion	73.46	83.76
CDY13078	Canola	cytosol, mitochondrion	73.37	83.65
PGSC0003DMT400071319	Potato	mitochondrion	82.44	82.84
Solyc04g011350.2.1	Tomato	plastid	82.34	82.75
Bra024417.1-P	Field mustard	mitochondrion	81.85	82.74
Solyc05g054640.2.1	Tomato	nucleus, unclear	76.49	82.18
Bra003211.1-P	Field mustard	mitochondrion	81.37	82.09
AT3G55410.2	Thale cress	mitochondrion	81.37	82.01
PGSC0003DMT400060466	Potato	mitochondrion	81.46	81.94
AT5G65750.1	Thale cress	mitochondrion	81.85	81.85
KRG90561	Soybean	mitochondrion	81.07	81.39
Bra027582.1-P	Field mustard	mitochondrion	80.39	80.86
Zm00001d036328_P001	Maize	mitochondrion	79.51	80.22
KRH01603	Soybean	nucleus	79.9	79.9
KRH70503	Soybean	nucleus	79.51	79.2
Zm00001d047592_P005	Maize	cytosol	13.37	76.54
KRH36194	Soybean	cytosol, mitochondrion	12.2	70.22
Zm00001d021889_P001	Maize	cytosol	3.32	65.38
Zm00001d023552_P001	Maize	plastid	10.44	55.44
Zm00001d021330_P001	Maize	cytosol	8.49	51.48

Protein Annotations

KEGG:00020+1.2.4.2	KEGG:00310+1.2.4.2	KEGG:00380+1.2.4.2	Gene3D:1.10.287.1150	EntrezGene:100383847	InterPro:2-oxogl_dehyd_N
MapMan:2.3.4.1	InterPro:2oxoglutarate_DH_E1	Gene3D:3.40.50.11610	Gene3D:3.40.50.12470	Gene3D:3.40.50.970	ProteinID:AQK43258.1
ProteinID:AQK43260.1	ProteinID:AQK43262.1	ProteinID:AQK43265.1	ProteinID:AQK43266.1	ProteinID:AQK43267.1	ProteinID:AQK43268.1
ProteinID:AQK43270.1	ProteinID:AQK43275.1	ProteinID:AQK43280.1	ProteinID:AQK43282.1	ProteinID:AQK43284.1	ProteinID:AQK43288.1
InterPro:DH_E1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004591	GO:GO:0005488	GO:GO:0006091
GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016624	GO:GO:0030976
GO:GO:0055114	UniProt:K7TJV6	InterPro:KGD_C	PFAM:PF00676	PFAM:PF02779	PFAM:PF16078
PFAM:PF16870	PIRSF:PIRSF000157	PANTHER:PTHR23152	PANTHER:PTHR23152:SF4	SMART:SM00861	SUPFAM:SSF52518
InterPro:THDP-binding	TIGRFAMs:TIGR00239	InterPro:Transketolase-like_Pyr-bd	UniParc:UPI000221AC03	EnsemblPlantsGene:Zm00001d025240	EnsemblPlants:Zm00001d025240_P002
EnsemblPlants:Zm00001d025240_T002	SEG:seg	:	:	:	:

Description

alpha keto dehydrogenase candidate12-oxoglutarate dehydrogenase E1 component

Coordinates

chr10:+:110657182..110663551

Molecular Weight (calculated)

116073.0 Da

IEP (calculated)

6.939

GRAVY (calculated)

-0.429

Length

1025 amino acids

Sequence
(BLAST)

0001: MGLFRAASGL ARLALRRNLL RAAASPFAAG GGAVPGAAPA RYFHSTCPRR FAAPTPRAVP LSRLTDSFLD GTSSVYLEEL QRAWEADPSS VDESWDNFFR
0101: NFVGQAATTS PGLSGQTIQE SMRLLLLVRA YQVSGHLKAK LDPLGLEERP VPDVLDPAFY GFSEADLDRE FFLGVWMMAG FLSENRPVQT LRSVLERLEQ
0201: AYCGTIGYEY MHIPDREKCN WLRDRIETVN PMDYTYDRRQ VMLDRLIWST QFESFLATKW TTAKRFGLEG AETLIPGMKE MFDRAAHLGV ESIVIGMPHR
0301: GRLNVLGNVV RKPLRQIFSE FSGGTKPVNE GEGLYTGTGD VKYHLGTSYD RPTRGGKHIH LSLVANPSHL EAVDPVVAGK TRAKQYYSND RDRTKNLGVL
0401: LHGDGSFSGQ GVVYETLHLS ALENYTTGGT IHIVVNNQVA FTTDPRSGRS SQYCTDVAKA LDAPIFHVNG DDLEAVVHVC ELAAEWRQTF HSDVVVDIVC
0501: YRRFGHNEID EPSFTQPKMY KVIRNHPSAL EIYQRKLLES GKISKEDIDR LNKKVSTILN EEFQNSKDYV PNKRDWLSAY WTGFKSPEQI SRIRNTGVKP
0601: EILKRVGEAM TTLPENFKPH RAVKKIFDLR RQMIETGEGI DWAVGEALAF ATLIIEGNHV RLSGQDVERG TFSHRHSVIH DQETGEQYCP LDHLVMNQDA
0701: ELFTVSNSSL SEFAVLGFEL GYSMENPNSL VLWEAQFGDF SNGAQVIFDQ FLSSGESKWL RQTGLVVCLP HGYDGQGPEH SSARLERFLQ MSDDNPYVIP
0801: EMDPTLRKQI QQCNWQVVNV TTPANYFHVL RRQIHRDFRK PLIVMSPKNL LRHKDCKSNL SEFDDLAGHP GFDKQGTRFK RLIKDQNNHK DLEEGINRLV
0901: LCSGKVYYEL DEERRKSERT DVAICRVEQL CPFPYDLIQR ELKRYPNAEI VWCQEEPMNM GAYSYINPRL LTAMKVLGRG GIEDIKYVGR APSAATATGF
1001: YSVHVQEQTE LVQKALQRDP LNYPF

Best Arabidopsis Sequence Match ( AT3G55410.1 )
(BLAST)

0001: MVWFRAGSSV TKLAVRRILN QGASYATRTR SIPSQTRSFH STICRPKAQS APVPRAVPLS KLTDSFLDGT SSVYLEELQR AWEADPNSVD ESWDNFFRNF
0101: VGQAATSPGI SGQTIQESMR LLLLVRAYQV NGHMKAKLDP LGLEQREIPE DLDLALYGFT EADLDREFFL GVWQMSGFMS ENRPVQTLRS ILTRLEQAYC
0201: GNIGFEYMHI ADRDKCNWLR EKIETPTPWR YNRERREVIL DRLAWSTQFE NFLATKWTTA KRFGLEGGES LIPGMKEMFD RAADLGVESI VIGMSHRGRL
0301: NVLGNVVRKP LRQIFSEFSG GIRPVDEVGY TGTGDVKYHL GTSYDRPTRG GKKIHLSLVA NPSHLEAADS VVVGKTRAKQ YYSNDLDRTK NLGILIHGDG
0401: SFAGQGVVYE TLHLSALPNY TTGGTIHIVV NNQVAFTTDP RAGRSSQYCT DVAKALSAPI FHVNGDDVEA VVHACELAAE WRQTFHSDVV VDLVCYRRFG
0501: HNEIDEPSFT QPKMYKVIKN HPSTLQIYHK KLLECGEVSQ QDIDRIQEKV NTILNEEFVA SKDYLPKKRD WLSTNWAGFK SPEQISRVRN TGVKPEILKT
0601: VGKAISSLPE NFKPHRAVKK VYEQRAQMIE SGEGVDWALA EALAFATLVV EGNHVRLSGQ DVERGTFSHR HSVLHDQETG EEYCPLDHLI MNQDPEMFTV
0701: SNSSLSEFGV LGFELGYSME SPNSLVLWEA QFGDFANGAQ VIFDQFISSG EAKWLRQTGL VMLLPHGYDG QGPEHSSARL ERYLQMSDDN PYVIPDMEPT
0801: MRKQIQECNW QIVNATTPAN YFHVLRRQIH RDFRKPLIVM APKNLLRHKD CKSNLSEFDD VQGHPGFDKQ GTRFKRLIKD QNDHSDLEEG IRRLVLCSGK
0901: VYYELDDERK KVGATDVAIC RVEQLCPFPY DLIQRELKRY PNAEIVWCQE EAMNMGAFSY ISPRLWTAMR SVNRGDMEDI KYVGRGPSAA TATGFYTFHV
1001: KEQAGLVQKA IGKEPIN

Arabidopsis Description

2-oxoglutarate dehydrogenase, E1 component [Source:UniProtKB/TrEMBL;Acc:F4IWV2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.