Factsheet for PGSC0003DMT400071319

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g011350.2.1	Tomato	plastid	98.63	98.63
PGSC0003DMT400060466	Potato	mitochondrion	91.47	91.56
VIT_13s0019g00510.t01	Wine grape	mitochondrion	79.8	86.97
CDY62385	Canola	mitochondrion	75.39	85.54
AT3G55410.2	Thale cress	mitochondrion	85.2	85.45
CDY53693	Canola	mitochondrion	75.29	85.43
CDY29088	Canola	cytosol, mitochondrion	75.0	85.09
CDY13078	Canola	cytosol, mitochondrion	74.9	84.98
CDY45626	Canola	mitochondrion	74.8	84.4
Bra003211.1-P	Field mustard	mitochondrion	83.92	84.25
CDY08754	Canola	mitochondrion	74.61	84.18
Os04t0390000-02	Rice	mitochondrion	83.53	83.86
TraesCS2A01G284400.1	Wheat	nucleus	83.43	83.76
TraesCS2B01G301400.2	Wheat	unclear	83.43	83.76
TraesCS2D01G283300.2	Wheat	golgi	83.43	83.76
AT5G65750.1	Thale cress	mitochondrion	84.12	83.71
Bra027582.1-P	Field mustard	mitochondrion	83.53	83.61
Bra024417.1-P	Field mustard	mitochondrion	82.75	83.23
EES10635	Sorghum	mitochondrion	83.53	83.12
EES10634	Sorghum	mitochondrion	83.53	83.12
GSMUA_Achr5P28580_001	Banana	mitochondrion	71.86	82.73
Zm00001d025240_P002	Maize	mitochondrion	82.84	82.44
KRG90561	Soybean	mitochondrion	82.25	82.17
GSMUA_Achr10P...	Banana	mitochondrion	80.1	82.11
HORVU2Hr1G013170.1	Barley	mitochondrion	79.31	82.05
KRH01603	Soybean	nucleus	82.25	81.85
GSMUA_Achr8P02070_001	Banana	mitochondrion	77.75	81.67
KRH70503	Soybean	nucleus	81.96	81.24
Zm00001d003947_P005	Maize	mitochondrion	83.04	80.98
Os07t0695800-01	Rice	mitochondrion	79.41	80.36
TraesCS2A01G079500.1	Wheat	golgi	79.22	79.45
TraesCS2D01G076900.1	Wheat	unclear	79.22	79.37
TraesCS2B01G094300.1	Wheat	mitochondrion	79.12	79.2
Zm00001d036328_P001	Maize	mitochondrion	78.82	79.13
HORVU2Hr1G070090.1	Barley	mitochondrion	80.29	78.9
Zm00001d047592_P005	Maize	cytosol	13.04	74.3
KRH36194	Soybean	cytosol, mitochondrion	12.16	69.66
Zm00001d021330_P001	Maize	cytosol	8.63	52.07
Zm00001d023552_P001	Maize	plastid	9.51	50.26

Protein Annotations

KEGG:00020+1.2.4.2	KEGG:00310+1.2.4.2	KEGG:00380+1.2.4.2	Gene3D:1.10.287.1150	EntrezGene:102591883	InterPro:2-oxogl_dehyd_N
MapMan:2.3.4.1	InterPro:2oxoglutarate_DH_E1	Gene3D:3.40.50.11610	Gene3D:3.40.50.12470	Gene3D:3.40.50.970	InterPro:DH_E1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004591	GO:GO:0005488	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016624	GO:GO:0030976	GO:GO:0055114
InterPro:KGD_C	UniProt:M1CNJ1	PFAM:PF00676	PFAM:PF02779	PFAM:PF16078	PFAM:PF16870
EnsemblPlantsGene:PGSC0003DMG400027739	PGSC:PGSC0003DMG400027739	EnsemblPlants:PGSC0003DMT400071319	PIRSF:PIRSF000157	PANTHER:PTHR23152	PANTHER:PTHR23152:SF4
SMART:SM00861	SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR00239	InterPro:Transketolase-like_Pyr-bd	UniParc:UPI000296937B
RefSeq:XP_006365716.1	RefSeq:XP_006365717.1	RefSeq:XP_006365718.1	RefSeq:XP_015160050.1	:	:

Description

2-oxoglutarate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400027739]

Coordinates

chr4:-:6968007..6975786

Molecular Weight (calculated)

115312.0 Da

IEP (calculated)

6.877

GRAVY (calculated)

-0.437

Length

1020 amino acids

Sequence
(BLAST)

0001: MAWFRAGSSV AKLAIRRAVS QGGSYVPRTR IIPSQSRYFH TTVVRPKAQA APVPRPVPLS KLTDSFLDGT SSVYLEELQR AWEQDPSSVD ESWDNFFRNF
0101: TGLAATSPGI SGQTIQESMN LLLLVRAYQV NGHLKAKLDP LDLEERDIPD VLDPVSYGFT EADLDREFFL GVWRMAGFLS ENRPVQTLRA ILTRLEQAYC
0201: GSIGFEYMHI SDHDKCNWLR ERIETPTPRE YNRERREVIL DRLMWSTQFE NFLATKWVAA KRFGLEGCET LIPGMKEMFD RSADLGVESI VIGMPHRGRL
0301: NVLGNVVRKP LRQIFSEFTG GTKPADGAGY VGTGDVKYHL GTSYDRPTRG GKRIHLSLVA NPSHLEAVDP VVIGKTRAKQ YYSNDVDRTK NMGILLHGDG
0401: SFAGQGVVYE TLHLSALPNY TTGGTIHIVV NNQVAFTTDP KAGRSSQYCT DVAKALSAPI FHVNGDDVEG VVHACELAAE WRQTFHSDVV VDIVCYRRFG
0501: HNEIDEPSFT QPKMYQVIRN HPSSLEIYQN KLLQYGQVTK DDVEKIHNKI NTILNEEFVA SKDYVPQKRD WLSAFWSGFK SPAQLSRVRN TGVKPEILKD
0601: VGKAITSLPD DFKAHRAVKR IFDDRKKMIE TGEGVDWAVG EALAFATLLV EGNHVRLSGQ DVERGTFSHR HSVIHDQETG AKYCPLDHVM MNQNEEMFTV
0701: SNSSLSEFGV LGFELGYSME NPNSLVLWEA QFGDFANGAQ VIFDQFLSSG EAKWLRQSGL VVLLPHGYDG QGPEHSSARL ERFLQMSDDN PYVIPDMEPT
0801: LRKQIQECNW QVVNVTTPAN YFHVLRRQIH RDFRKPLIVM SPKNLLRHKD CKSNLSEFDD VQGHPGFDKQ GTRFKRLIKD QNDHSDLEEG IRRLVLCSGK
0901: VYYELDEERK KVEGKDVAIC RVEQLCPFPY DLVQRELKRY PNAEIVWCQE EPMNMGAYQY IAPRLSTAMK ALDRGNIDDI KYAGRGPSAA TATGFYQVHV
1001: KEQTGLVQKA LQQDPINSPV

Best Arabidopsis Sequence Match ( AT3G55410.1 )
(BLAST)

0001: MVWFRAGSSV TKLAVRRILN QGASYATRTR SIPSQTRSFH STICRPKAQS APVPRAVPLS KLTDSFLDGT SSVYLEELQR AWEADPNSVD ESWDNFFRNF
0101: VGQAATSPGI SGQTIQESMR LLLLVRAYQV NGHMKAKLDP LGLEQREIPE DLDLALYGFT EADLDREFFL GVWQMSGFMS ENRPVQTLRS ILTRLEQAYC
0201: GNIGFEYMHI ADRDKCNWLR EKIETPTPWR YNRERREVIL DRLAWSTQFE NFLATKWTTA KRFGLEGGES LIPGMKEMFD RAADLGVESI VIGMSHRGRL
0301: NVLGNVVRKP LRQIFSEFSG GIRPVDEVGY TGTGDVKYHL GTSYDRPTRG GKKIHLSLVA NPSHLEAADS VVVGKTRAKQ YYSNDLDRTK NLGILIHGDG
0401: SFAGQGVVYE TLHLSALPNY TTGGTIHIVV NNQVAFTTDP RAGRSSQYCT DVAKALSAPI FHVNGDDVEA VVHACELAAE WRQTFHSDVV VDLVCYRRFG
0501: HNEIDEPSFT QPKMYKVIKN HPSTLQIYHK KLLECGEVSQ QDIDRIQEKV NTILNEEFVA SKDYLPKKRD WLSTNWAGFK SPEQISRVRN TGVKPEILKT
0601: VGKAISSLPE NFKPHRAVKK VYEQRAQMIE SGEGVDWALA EALAFATLVV EGNHVRLSGQ DVERGTFSHR HSVLHDQETG EEYCPLDHLI MNQDPEMFTV
0701: SNSSLSEFGV LGFELGYSME SPNSLVLWEA QFGDFANGAQ VIFDQFISSG EAKWLRQTGL VMLLPHGYDG QGPEHSSARL ERYLQMSDDN PYVIPDMEPT
0801: MRKQIQECNW QIVNATTPAN YFHVLRRQIH RDFRKPLIVM APKNLLRHKD CKSNLSEFDD VQGHPGFDKQ GTRFKRLIKD QNDHSDLEEG IRRLVLCSGK
0901: VYYELDDERK KVGATDVAIC RVEQLCPFPY DLIQRELKRY PNAEIVWCQE EAMNMGAFSY ISPRLWTAMR SVNRGDMEDI KYVGRGPSAA TATGFYTFHV
1001: KEQAGLVQKA IGKEPIN

Arabidopsis Description

2-oxoglutarate dehydrogenase, E1 component [Source:UniProtKB/TrEMBL;Acc:F4IWV2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.