Factsheet for Solyc04g011350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

plastid: 22908117
plastid: 26371478
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071319	Potato	mitochondrion	98.63	98.63
Solyc05g054640.2.1	Tomato	nucleus, unclear	85.2	91.09
VIT_13s0019g00510.t01	Wine grape	mitochondrion	79.61	86.75
CDY62385	Canola	mitochondrion	75.49	85.65
CDY53693	Canola	mitochondrion	75.39	85.54
AT3G55410.2	Thale cress	mitochondrion	85.0	85.25
CDY29088	Canola	cytosol, mitochondrion	75.1	85.21
CDY13078	Canola	cytosol, mitochondrion	75.0	85.09
CDY45626	Canola	mitochondrion	74.8	84.4
Bra003211.1-P	Field mustard	mitochondrion	84.02	84.35
CDY08754	Canola	mitochondrion	74.61	84.18
TraesCS2B01G301400.2	Wheat	unclear	83.43	83.76
TraesCS2D01G283300.2	Wheat	golgi	83.43	83.76
TraesCS2A01G284400.1	Wheat	nucleus	83.43	83.76
Os04t0390000-02	Rice	mitochondrion	83.43	83.76
Bra027582.1-P	Field mustard	mitochondrion	83.53	83.61
AT5G65750.1	Thale cress	mitochondrion	84.02	83.61
Bra024417.1-P	Field mustard	mitochondrion	82.75	83.23
GSMUA_Achr5P28580_001	Banana	mitochondrion	72.16	83.07
EES10635	Sorghum	mitochondrion	83.43	83.02
EES10634	Sorghum	mitochondrion	83.43	83.02
HORVU2Hr1G013170.1	Barley	mitochondrion	79.71	82.45
KRH01603	Soybean	nucleus	82.84	82.44
KRG90561	Soybean	mitochondrion	82.45	82.37
Zm00001d025240_P002	Maize	mitochondrion	82.75	82.34
GSMUA_Achr10P...	Banana	mitochondrion	80.29	82.31
GSMUA_Achr8P02070_001	Banana	mitochondrion	77.94	81.87
KRH70503	Soybean	nucleus	82.45	81.73
Zm00001d003947_P005	Maize	mitochondrion	83.04	80.98
Os07t0695800-01	Rice	mitochondrion	79.71	80.65
TraesCS2A01G079500.1	Wheat	golgi	79.61	79.84
TraesCS2D01G076900.1	Wheat	unclear	79.61	79.76
TraesCS2B01G094300.1	Wheat	mitochondrion	79.51	79.59
Zm00001d036328_P001	Maize	mitochondrion	79.12	79.43
HORVU2Hr1G070090.1	Barley	mitochondrion	80.49	79.09
Zm00001d047592_P005	Maize	cytosol	13.14	74.86
KRH36194	Soybean	cytosol, mitochondrion	11.96	68.54
Zm00001d021330_P001	Maize	cytosol	8.63	52.07
Zm00001d023552_P001	Maize	plastid	9.41	49.74

Protein Annotations

KEGG:00020+1.2.4.2	KEGG:00310+1.2.4.2	KEGG:00380+1.2.4.2	Gene3D:1.10.287.1150	InterPro:2-oxogl_dehyd_N	MapMan:2.3.4.1
InterPro:2oxoglutarate_DH_E1	Gene3D:3.40.50.11610	Gene3D:3.40.50.12470	Gene3D:3.40.50.970	InterPro:DH_E1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004591	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016624	GO:GO:0030976	GO:GO:0045252	GO:GO:0055114	UniProt:K4BPJ0
InterPro:KGD_C	PFAM:PF00676	PFAM:PF02779	PFAM:PF16078	PFAM:PF16870	PIRSF:PIRSF000157
PANTHER:PTHR23152	PANTHER:PTHR23152:SF4	SMART:SM00861	SUPFAM:SSF52518	EnsemblPlantsGene:Solyc04g011350.2	EnsemblPlants:Solyc04g011350.2.1
InterPro:THDP-binding	TIGRFAMs:TIGR00239	InterPro:Transketolase-like_Pyr-bd	UniParc:UPI0002765E21	:	:

Description

No Description!

Coordinates

chr4:-:3828961..3837844

Molecular Weight (calculated)

115409.0 Da

IEP (calculated)

6.877

GRAVY (calculated)

-0.436

Length

1020 amino acids

Sequence
(BLAST)

0001: MAWFRAGSSV AKLAIRRAVS QGGSYVPRTR IIPSQSRYFH TTVVRPKAQA APVPRPVPLS KLTDSFLDGT SSVYLEELQR AWEQDPSSVD ESWDNFFRNF
0101: TGLAATSPGI SGQTIQESMN LLLLVRAYQV NGHLKAKLDP LDLEERDIPD VLDPVSYGFT EADLDREFFL GVWRMAGFLS ENRPVQTLRA ILTRLEQAYC
0201: GSIGFEYMHI SDRDKCNWLR ERIETPTPRE YNRERREVIL DRLMWSTQFE NFLATKWVAA KRFGLEGCET LIPGMKEMFD RSADLGVESI VIGMPHRGRL
0301: NVLGNVVRKP LRQIFSEFTG GTKPADGAGY VGTGDVKYHL GTSYDRPTRG GKRIHLSLVA NPSHLEAVDP VVIGKTRAKQ YYSNDVDRTK NMGILLHGDG
0401: SFAGQGVVYE TLHLSALPNY TTGGTIHIVV NNQVAFTTDP KAGRSSQYCT DVAKALSAPI FHVNGDDVEG VVYACELAAE WRQTFHSDVV VDIVCYRRFG
0501: HNEIDEPSFT QPKMYQVIRN HPSSLEIYQN KLLQHGQVTK DDVEKIHNKI NTILNEEFVA SKDYVPQKRD WLSAFWSGFK SPAQLSRVRN TGVKPEILKD
0601: VGKAITSLPD DFKPHRAVKR IFDDRKKMIE TGEGVDWAVG EALAFATLLV EGNHVRLSGQ DVERGTFSHR HSVVHDQETG AKYCPLDHVM MNQNEEMFTV
0701: SNSSLSEFGV LGFELGYSME NPNSLVLWEA QFGDFANGAQ VIFDQFLSSG EAKWLRQSGL VVLLPHGYDG QGPEHSSARL ERFLQMSDDN PYVIPDMEPT
0801: LRKQIQECNL QVVNVTTPAN YFHVLRRQIH RDFRKPLIVM SPKNLLRHKD CKSNLSEFDD VQGHPGFDKQ GTRFKRLIKD QNDHSDLEED IRRLVLCSGK
0901: VYYELDEERK KVEGKDVAIC RVEQLCPFPY DLVQRELKRY PNAEIVWCQE EPMNMGAYHY IAPRLSTAMK ALNRGNVDDI KYVGRAPSAA TATGFYQVHV
1001: KEQTELVQKA LQQDPISSPV

Best Arabidopsis Sequence Match ( AT3G55410.1 )
(BLAST)

0001: MVWFRAGSSV TKLAVRRILN QGASYATRTR SIPSQTRSFH STICRPKAQS APVPRAVPLS KLTDSFLDGT SSVYLEELQR AWEADPNSVD ESWDNFFRNF
0101: VGQAATSPGI SGQTIQESMR LLLLVRAYQV NGHMKAKLDP LGLEQREIPE DLDLALYGFT EADLDREFFL GVWQMSGFMS ENRPVQTLRS ILTRLEQAYC
0201: GNIGFEYMHI ADRDKCNWLR EKIETPTPWR YNRERREVIL DRLAWSTQFE NFLATKWTTA KRFGLEGGES LIPGMKEMFD RAADLGVESI VIGMSHRGRL
0301: NVLGNVVRKP LRQIFSEFSG GIRPVDEVGY TGTGDVKYHL GTSYDRPTRG GKKIHLSLVA NPSHLEAADS VVVGKTRAKQ YYSNDLDRTK NLGILIHGDG
0401: SFAGQGVVYE TLHLSALPNY TTGGTIHIVV NNQVAFTTDP RAGRSSQYCT DVAKALSAPI FHVNGDDVEA VVHACELAAE WRQTFHSDVV VDLVCYRRFG
0501: HNEIDEPSFT QPKMYKVIKN HPSTLQIYHK KLLECGEVSQ QDIDRIQEKV NTILNEEFVA SKDYLPKKRD WLSTNWAGFK SPEQISRVRN TGVKPEILKT
0601: VGKAISSLPE NFKPHRAVKK VYEQRAQMIE SGEGVDWALA EALAFATLVV EGNHVRLSGQ DVERGTFSHR HSVLHDQETG EEYCPLDHLI MNQDPEMFTV
0701: SNSSLSEFGV LGFELGYSME SPNSLVLWEA QFGDFANGAQ VIFDQFISSG EAKWLRQTGL VMLLPHGYDG QGPEHSSARL ERYLQMSDDN PYVIPDMEPT
0801: MRKQIQECNW QIVNATTPAN YFHVLRRQIH RDFRKPLIVM APKNLLRHKD CKSNLSEFDD VQGHPGFDKQ GTRFKRLIKD QNDHSDLEEG IRRLVLCSGK
0901: VYYELDDERK KVGATDVAIC RVEQLCPFPY DLIQRELKRY PNAEIVWCQE EAMNMGAFSY ISPRLWTAMR SVNRGDMEDI KYVGRGPSAA TATGFYTFHV
1001: KEQAGLVQKA IGKEPIN

Arabidopsis Description

2-oxoglutarate dehydrogenase, E1 component [Source:UniProtKB/TrEMBL;Acc:F4IWV2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.