CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023552_P001	Maize	plastid	20.22	18.65
KRG90561	Soybean	mitochondrion	88.2	15.38
GSMUA_Achr5P28580_001	Banana	mitochondrion	70.22	14.11
VIT_13s0019g00510.t01	Wine grape	mitochondrion	73.6	14.0
KRH01603	Soybean	nucleus	78.09	13.56
CDY62385	Canola	mitochondrion	67.42	13.35
KRH70503	Soybean	nucleus	76.97	13.31
CDY08754	Canola	mitochondrion	67.42	13.27
CDY45626	Canola	mitochondrion	67.42	13.27
CDY29088	Canola	cytosol, mitochondrion	66.85	13.24
CDY53693	Canola	mitochondrion	66.85	13.24
CDY13078	Canola	cytosol, mitochondrion	66.29	13.13
Solyc05g054640.2.1	Tomato	nucleus, unclear	69.1	12.89
GSMUA_Achr8P02070_001	Banana	mitochondrion	69.66	12.77
EES10635	Sorghum	mitochondrion	71.91	12.49
TraesCS2A01G284400.1	Wheat	nucleus	70.79	12.4
TraesCS2D01G283300.2	Wheat	golgi	70.79	12.4
EES10634	Sorghum	mitochondrion	71.35	12.39
TraesCS2B01G301400.2	Wheat	unclear	70.22	12.3
HORVU2Hr1G013170.1	Barley	mitochondrion	67.98	12.27
Os04t0390000-02	Rice	mitochondrion	69.66	12.2
Os07t0695800-01	Rice	mitochondrion	69.1	12.2
Zm00001d025240_P002	Maize	mitochondrion	70.22	12.2
PGSC0003DMT400071319	Potato	mitochondrion	69.66	12.16
Zm00001d003947_P005	Maize	mitochondrion	71.35	12.14
Solyc04g011350.2.1	Tomato	plastid	68.54	11.96
Zm00001d036328_P001	Maize	mitochondrion	67.98	11.91
TraesCS2A01G079500.1	Wheat	golgi	67.98	11.9
TraesCS2D01G076900.1	Wheat	unclear	67.98	11.89
PGSC0003DMT400060466	Potato	mitochondrion	67.98	11.87
TraesCS2B01G094300.1	Wheat	mitochondrion	67.98	11.87
Bra024417.1-P	Field mustard	mitochondrion	67.42	11.83
AT3G55410.2	Thale cress	mitochondrion	67.42	11.8
Bra003211.1-P	Field mustard	mitochondrion	66.85	11.71
AT5G65750.1	Thale cress	mitochondrion	67.42	11.71
Bra027582.1-P	Field mustard	mitochondrion	66.29	11.58
GSMUA_Achr10P...	Banana	mitochondrion	64.61	11.56
HORVU2Hr1G070090.1	Barley	mitochondrion	62.92	10.79
Zm00001d021330_P001	Maize	cytosol	8.99	9.47
Zm00001d047592_P005	Maize	cytosol	0.0	0.0

Protein Annotations

KEGG:00020+1.2.4.2	KEGG:00310+1.2.4.2	KEGG:00380+1.2.4.2	InterPro:2oxoglutarate_DH_E1	Gene3D:3.40.50.11610	MapMan:35.2
EMBL:ACUP02006721	EnsemblPlantsGene:GLYMA_10G290100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004591	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091
GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030976	GO:GO:0045252
GO:GO:0055114	UniProt:K7LM27	InterPro:KGD_C	EnsemblPlants:KRH36194	ProteinID:KRH36194	ProteinID:KRH36194.1
PFAM:PF16870	PANTHER:PTHR23152	PANTHER:PTHR23152:SF4	MetaCyc:PWY-5084	UniParc:UPI00029526A2	:

Description

hypothetical protein

Coordinates

chr10:+:50834770..50836427

Molecular Weight (calculated)

20496.8 Da

IEP (calculated)

7.043

GRAVY (calculated)

-0.416

Length

178 amino acids

Sequence
(BLAST)

001: MADDHPYVIP EMDPILRKQI QECNWQIVNI HREFRKPLIV MPAKNLLRNQ NKHSDVEEGI RRLVLCSGKV YYELDEQRTK EDAKDVAVYA EVVWCQEEPM
101: NMGGYTYILP RLITSMKAVG RGGYEDVKYA GRAPSAATAT GFLKVHLNEQ AELVQKAIQR EPINFPLLRH SIYIVSPE

Best Arabidopsis Sequence Match ( AT3G55410.1 )
(BLAST)

0001: MVWFRAGSSV TKLAVRRILN QGASYATRTR SIPSQTRSFH STICRPKAQS APVPRAVPLS KLTDSFLDGT SSVYLEELQR AWEADPNSVD ESWDNFFRNF
0101: VGQAATSPGI SGQTIQESMR LLLLVRAYQV NGHMKAKLDP LGLEQREIPE DLDLALYGFT EADLDREFFL GVWQMSGFMS ENRPVQTLRS ILTRLEQAYC
0201: GNIGFEYMHI ADRDKCNWLR EKIETPTPWR YNRERREVIL DRLAWSTQFE NFLATKWTTA KRFGLEGGES LIPGMKEMFD RAADLGVESI VIGMSHRGRL
0301: NVLGNVVRKP LRQIFSEFSG GIRPVDEVGY TGTGDVKYHL GTSYDRPTRG GKKIHLSLVA NPSHLEAADS VVVGKTRAKQ YYSNDLDRTK NLGILIHGDG
0401: SFAGQGVVYE TLHLSALPNY TTGGTIHIVV NNQVAFTTDP RAGRSSQYCT DVAKALSAPI FHVNGDDVEA VVHACELAAE WRQTFHSDVV VDLVCYRRFG
0501: HNEIDEPSFT QPKMYKVIKN HPSTLQIYHK KLLECGEVSQ QDIDRIQEKV NTILNEEFVA SKDYLPKKRD WLSTNWAGFK SPEQISRVRN TGVKPEILKT
0601: VGKAISSLPE NFKPHRAVKK VYEQRAQMIE SGEGVDWALA EALAFATLVV EGNHVRLSGQ DVERGTFSHR HSVLHDQETG EEYCPLDHLI MNQDPEMFTV
0701: SNSSLSEFGV LGFELGYSME SPNSLVLWEA QFGDFANGAQ VIFDQFISSG EAKWLRQTGL VMLLPHGYDG QGPEHSSARL ERYLQMSDDN PYVIPDMEPT
0801: MRKQIQECNW QIVNATTPAN YFHVLRRQIH RDFRKPLIVM APKNLLRHKD CKSNLSEFDD VQGHPGFDKQ GTRFKRLIKD QNDHSDLEEG IRRLVLCSGK
0901: VYYELDDERK KVGATDVAIC RVEQLCPFPY DLIQRELKRY PNAEIVWCQE EAMNMGAFSY ISPRLWTAMR SVNRGDMEDI KYVGRGPSAA TATGFYTFHV
1001: KEQAGLVQKA IGKEPIN

Arabidopsis Description

2-oxoglutarate dehydrogenase, E1 component [Source:UniProtKB/TrEMBL;Acc:F4IWV2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.