CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, cytosol

Predictor Summary:

plastid 1
endoplasmic reticulum 2
extracellular 1
vacuole 2
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, vacuole
Any Predictor:	endoplasmic reticulum, plastid, vacuole
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76116	Canola	cytosol	88.32	93.93
AT3G55190.1	Thale cress	cytosol	70.92	81.82
CDY24963	Canola	cytosol	48.91	56.6
CDY40205	Canola	cytosol	45.92	55.59
CDX73397	Canola	cytosol	45.92	55.59
CDY72172	Canola	cytosol	23.64	55.41
CDX93264	Canola	cytosol	47.83	55.35
CDY07006	Canola	cytosol	46.74	55.31
CDY07008	Canola	cytosol	47.01	54.4
PGSC0003DMT400077598	Potato	cytosol	46.74	53.92
Zm00001d012434_P001	Maize	cytosol	14.4	53.54
CDY07007	Canola	cytosol	32.61	52.86
Solyc04g010250.2.1	Tomato	cytosol	45.65	52.66
EES03847	Sorghum	cytosol	42.12	50.16
CDY07651	Canola	cytosol	49.18	50.14
KRG92965	Soybean	cytosol	44.02	49.54
Os01t0837200-01	Rice	cytosol	15.49	47.9
VIT_00s0317g00110.t01	Wine grape	cytosol	41.3	47.65
KRH36216	Soybean	nucleus	44.84	47.55
HORVU3Hr1G087040.1	Barley	cytosol	20.11	47.13
Zm00001d042944_P001	Maize	cytosol	39.4	46.93
TraesCS3A01G355100.1	Wheat	cytosol	36.68	45.15
TraesCS3B01G388000.1	Wheat	cytosol	36.68	45.15
TraesCS3D01G349000.1	Wheat	cytosol	39.13	45.14
TraesCS3D01G349100.1	Wheat	cytosol	36.41	44.82
TraesCS3A01G355000.1	Wheat	cytosol	34.24	44.52
GSMUA_Achr6P34380_001	Banana	cytosol	41.58	44.35
OQU87824	Sorghum	cytosol	35.6	43.52
CDX76667	Canola	cytosol	38.86	42.31
CDX83323	Canola	cytosol	39.67	42.07
CDY55538	Canola	cytosol	39.4	41.67
CDX95729	Canola	cytosol	39.13	41.5
CDY27476	Canola	cytosol	39.13	41.5
HORVU3Hr1G086980.2	Barley	extracellular	18.75	41.07
CDX79202	Canola	cytosol	19.57	40.22
CDX93957	Canola	cytosol	32.61	39.87
CDX89152	Canola	mitochondrion	39.67	39.35
HORVU3Hr1G087020.4	Barley	mitochondrion	37.77	38.4
CDY20587	Canola	cytosol	33.15	38.01
CDY20979	Canola	cytosol	32.61	37.27
CDY11452	Canola	cytosol	35.33	34.21
CDY62163	Canola	plastid	19.57	33.03
CDX68059	Canola	cytosol	16.58	32.11
CDX85571	Canola	plastid	28.26	31.71
CDY72184	Canola	cytosol	27.99	31.4
CDY62199	Canola	cytosol	27.99	31.4
CDX69469	Canola	mitochondrion	30.71	31.3
CDY44908	Canola	cytosol	27.45	30.15
CDY13986	Canola	cytosol	27.45	30.15
CDX92543	Canola	cytosol	27.72	30.09
CDY69863	Canola	cytosol	27.17	29.85
CDY40888	Canola	plastid	30.98	29.84
CDY40890	Canola	plastid	30.98	29.77
CDY38348	Canola	plastid	30.71	29.5
CDY26499	Canola	mitochondrion	29.35	28.88
CDX93265	Canola	cytosol	46.74	28.52
CDX96478	Canola	plastid	22.28	22.65
CDX97130	Canola	cytosol, endoplasmic reticulum, golgi, plastid	23.64	22.31
CDX69743	Canola	cytosol, endoplasmic reticulum, golgi, plastid	23.64	22.31
CDX83852	Canola	plastid	22.83	22.16
CDX96722	Canola	plastid	22.55	21.39
CDX72991	Canola	plastid	22.83	20.64
CDX68225	Canola	mitochondrion	24.18	19.14
CDY11104	Canola	plastid	23.91	19.05
CDX85514	Canola	cytosol	31.79	18.99
CDY38132	Canola	mitochondrion	30.71	18.68

Protein Annotations

EnsemblPlants:CDY02917	EnsemblPlantsGene:GSBRNA2T00115175001	Gene3D:3.40.50.1820	GO:A0A078EP87	InterPro:AB_hydrolase	InterPro:Hydrolase_4
InterPro:IPR029058	ncoils:Coil	PANTHER:PTHR11614	PANTHER:PTHR11614:SF92	PFAM:PF12146	ProteinID:CDY02917
ProteinID:CDY02917.1	SEG:seg	SUPFAM:SSF53474	TMHMM:TMhelix	UniParc:UPI0004EE957A	MapMan:5.7.1.1

Description

BnaC04g25690D

Coordinates

chrLK031938:+:422414..425031

Molecular Weight (calculated)

42590.9 Da

IEP (calculated)

6.746

GRAVY (calculated)

-0.191

Length

368 amino acids

Sequence
(BLAST)

001: MVLVSEEKEH DYCLIQPFSK HFFFHKKQQP NYIFCYVLLL LSHYIFWDQI CFIILQAYID GQVGYSEEFI KNSRGMQLLT CKWFPVNQEP RALIFFCHGY
101: AIDCSTTFKD VASKFAKEGF GMYGIEYEGH GRSGGLNVYI DDFDLLINDV YSHFSKISEM GENPKKKKFL MGESMGGAVV LLLHRKKPEF LDGAILIAPM
201: CKIAEEMKPP KTVISMMNLV IHLIPSWKSI LPGPDIINLA IKQPHKRQEI KDNPNCYIGR PRMKTMSELF RVSLDLENRL HEVTMPFIVL HGEDDKVTDK
301: EASKLLYEVA SSNDKTLKLY PEMWHSLLFG EPLEKSELVF NDIVQWMETR INTLQVNANN NHEAKSQI

Best Arabidopsis Sequence Match ( AT3G55190.1 )
(BLAST)

001: MAHVDGQVGY SEEFIENSRG MQLLTCKWFP VNQEPRALIF FCHGYAIDCS TTFKDIAPKF AKEGFAVHGI EYEGHGRSSG LSVYIDNFDL LIDDVSSHFS
101: KISEMGDNTK KKRFLMGESM GGAVVLLLHR KKPEFWDGGI LIAPMCKIAE EMKPSRMVIS MINMVTNLIP SWKSIIHGPD ILNSAIKLPE KRHEIRTNPN
201: CYNGWPRMKT MSELFRISLD LENRLNEVTM PFIVLHGEDD KVTDKGGSKL LYEVALSNDK TLKLYPEMWH SLLFGEPPEN SEIVFNDIVQ WMQTRITTLQ
301: VKANNHEAKT SNLITSDSV

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9M3D0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.