CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU78677	Sorghum	cytosol	37.78	59.94
KXG22925	Sorghum	nucleus	52.12	56.33
KXG22929	Sorghum	nucleus	50.71	50.3
TraesCS2B01G089100.1	Wheat	nucleus	27.27	44.85
TraesCS2D01G073000.2	Wheat	mitochondrion	34.95	42.3
HORVU2Hr1G009710.27	Barley	cytosol	35.56	42.11
TraesCS2A01G074100.1	Wheat	mitochondrion	34.14	41.73
TraesCS2D01G056000.1	Wheat	cytosol	36.36	40.36
TraesCS2A01G057400.1	Wheat	cytosol	26.67	38.6
TraesCS2B01G073500.1	Wheat	cytosol	36.36	37.66
TraesCS2D01G056200.1	Wheat	cytosol	35.76	37.5
TraesCS2B01G078500.1	Wheat	nucleus	30.3	37.04
TraesCS2D01G073100.1	Wheat	nucleus	29.49	36.14
TraesCS2B01G089800.1	Wheat	nucleus	30.51	35.87
TraesCS2B01G089600.1	Wheat	nucleus	28.69	35.24
TraesCS2A01G074500.1	Wheat	nucleus	27.47	34.69
TraesCS2B01G089000.1	Wheat	cytosol	31.31	34.68
TraesCS2D01G072900.1	Wheat	cytosol, mitochondrion, nucleus	30.71	34.31
HORVU2Hr1G012520.2	Barley	cytosol, nucleus	29.7	34.03
TraesCS2A01G074000.1	Wheat	cytosol	30.1	34.02
HORVU2Hr1G012540.44	Barley	cytosol	25.45	29.93
EES15282	Sorghum	cytosol	16.57	25.31
Os04t0652600-01	Rice	nucleus	20.0	18.07

Protein Annotations

EnsemblPlants:EES15642	EnsemblPlantsGene:SORBI_3008G029900	Gene3D:1.20.1300.20	Gene3D:3.30.200.60	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C65_otubain
PANTHER:PTHR12931	PANTHER:PTHR12931:SF18	PFAM:PF10275	ProteinID:EES15642	ProteinID:EES15642.2	SEG:seg
SUPFAM:SSF54001	UniParc:UPI00081ACC15	UniProt:C5YRJ8	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr8:+:2662628..2671813

Molecular Weight (calculated)

53867.5 Da

IEP (calculated)

6.423

GRAVY (calculated)

-0.359

Length

495 amino acids

Sequence
(BLAST)

001: MAEKGLPPRK RVRFRFTSNP SAGSSAGGGG GGGDGDGDGA AAPAPALRQE PSSSAPRSPS PPKPLTCNPG AGSSGGGGAA GQELSYSPPP LSPSSPGDED
101: PGEAGRELSY SPPSLSWSSS DDEDKLDEFQ IRNGWGSLFM SDPQVLSAMC SSDPQNPPCY IGRQNCEPLT RQKFLSLHHN WQQLLDGKNT YLRPPKNNRV
201: AKDNDDDSIF VTPEPLELTL QCQMPLSYLV NSAGGIPTIQ QKYKILSEHY VCFRPVRSDG SQFYRAFFFS YLENLGKMQC SQAEVARLMD CVARSRVNFR
301: RLKWNNAYFS NPEAFFSSVV SEFEHLVNLV ANGLNSDDLY EISLQEISSS RILSLLRLLT EVHIRTHEAD YSRVLSQKNA HLFCIESVRP FGAGIEILQI
401: RAISQALGIP VHVAVVDGAM KDGTVQVLCL DFVPQSESGA SRTSGSLSSI RQYSLSSATD QHPVLPAGNL FLSDRMPLVT IFMTTANTTA IMYRK

Best Arabidopsis Sequence Match ( AT1G28120.1 )
(BLAST)

001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK

Arabidopsis Description

Ubiquitin thioesterase [Source:UniProtKB/TrEMBL;Acc:K9M9G0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.