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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 2
  • extracellular 4
  • golgi 4
  • plasma membrane 7
  • endoplasmic reticulum 5
  • vacuole 4
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400054780 Potato plasma membrane 54.57 63.56
PGSC0003DMT400049147 Potato plasma membrane 60.5 54.53
PGSC0003DMT400064458 Potato plasma membrane 44.52 47.56
VIT_19s0014g02450.t01 Wine grape plasma membrane 52.05 46.82
PGSC0003DMT400054764 Potato plasma membrane 55.25 45.92
KRH27266 Soybean plasma membrane 29.91 45.64
VIT_19s0014g02440.t01 Wine grape plasma membrane 51.14 45.44
GSMUA_Achr2P13840_001 Banana plasma membrane 44.98 44.87
AT3G23550.1 Thale cress plasma membrane 47.72 44.56
AT3G23560.1 Thale cress plasma membrane 47.03 43.19
KRH22061 Soybean cytosol, peroxisome, plasma membrane 47.95 42.0
TraesCS2D01G142100.1 Wheat plasma membrane 40.41 40.6
KRH22058 Soybean plasma membrane 46.35 40.28
Os07t0108200-00 Rice cytosol, peroxisome, plasma membrane 43.61 39.3
TraesCS1A01G032900.1 Wheat plasma membrane 43.15 39.29
HORVU0Hr1G002600.4 Barley golgi 32.65 39.18
TraesCS2A01G261700.1 Wheat plasma membrane 43.84 39.1
TraesCS2D01G262300.1 Wheat plasma membrane 43.61 38.9
TraesCS1D01G034300.1 Wheat plasma membrane 42.69 38.88
TraesCS6A01G350400.1 Wheat plasma membrane 42.47 38.51
TraesCS6B01G383300.1 Wheat plasma membrane 42.47 38.51
HORVU1Hr1G003490.2 Barley plasma membrane 42.01 38.49
TraesCS2B01G280500.1 Wheat plasma membrane 43.15 38.49
TraesCS6D01G332800.1 Wheat cytosol, plasma membrane, vacuole 42.24 38.14
HORVU0Hr1G039670.1 Barley plasma membrane 41.78 37.89
TraesCS2B01G163300.3 Wheat cytosol, plasma membrane, vacuole 41.78 37.81
HORVU6Hr1G084080.3 Barley plasma membrane 41.78 37.65
GSMUA_Achr4P27830_001 Banana plasma membrane 47.95 37.63
Os07t0502200-01 Rice plasma membrane 41.32 37.55
TraesCS2A01G139200.1 Wheat plasma membrane 41.1 37.34
Zm00001d021569_P001 Maize plasma membrane 40.64 36.85
HORVU2Hr1G063690.5 Barley cytosol, plasma membrane 43.38 36.61
Zm00001d018638_P001 Maize cytosol, peroxisome, plasma membrane 41.78 36.6
OQU88303 Sorghum cytosol, peroxisome, plasma membrane 41.78 36.17
KRH22064 Soybean plasma membrane 43.15 35.26
PGSC0003DMT400078374 Potato plasma membrane 33.33 34.19
PGSC0003DMT400078371 Potato plasma membrane 34.47 33.26
Bra023719.1-P Field mustard plasma membrane 40.41 33.15
PGSC0003DMT400078716 Potato extracellular, plasma membrane, vacuole 31.74 32.33
PGSC0003DMT400046664 Potato plasma membrane 34.47 31.86
PGSC0003DMT400015301 Potato plasma membrane 34.7 31.47
PGSC0003DMT400048259 Potato plasma membrane 34.02 31.24
PGSC0003DMT400014431 Potato plasma membrane 35.16 31.11
EER99421 Sorghum plasma membrane 41.78 30.91
PGSC0003DMT400043016 Potato cytosol, plasma membrane, vacuole 32.88 30.7
PGSC0003DMT400078840 Potato golgi, plasma membrane, vacuole 32.65 30.62
PGSC0003DMT400026959 Potato cytosol, plasma membrane, vacuole 33.33 30.42
PGSC0003DMT400065417 Potato plasma membrane 32.88 30.19
PGSC0003DMT400078715 Potato plasma membrane 32.42 29.96
PGSC0003DMT400070690 Potato endoplasmic reticulum, plasma membrane, vacuole 31.05 29.76
PGSC0003DMT400046656 Potato plasma membrane 31.05 29.18
PGSC0003DMT400070650 Potato plasma membrane 22.15 28.87
PGSC0003DMT400046666 Potato plasma membrane 31.96 28.63
CDY18117 Canola cytosol, extracellular, plasma membrane 1.6 20.0
Protein Annotations
MapMan:24.2.4.1.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0006855
GO:GO:0008150GO:GO:0015238GO:GO:0015297GO:GO:0016020GO:GO:0016021GO:GO:0055085
UniProt:M1A588InterPro:MATE_famPFAM:PF01554EnsemblPlantsGene:PGSC0003DMG400005852PGSC:PGSC0003DMG400005852EnsemblPlants:PGSC0003DMT400014996
PANTHER:PTHR11206PANTHER:PTHR11206:SF78TIGRFAMs:TIGR00797TMHMM:TMhelixUniParc:UPI000296EC15:
Description
TRANSPARENT TESTA 12 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005852]
Coordinates
chr8:-:5392805..5395037
Molecular Weight (calculated)
48379.1 Da
IEP (calculated)
8.005
GRAVY (calculated)
0.837
Length
438 amino acids
Sequence
(BLAST)
001: MISSPLIVIL TSFYSINIVS VMFAGNLQLA ASNLATSWAV ITGFSFIFGL NTAVETLCRQ SRTTTYTLLQ TSCVISFFFS TAIALLWWYS DTILIHLFHQ
101: DHEIAKEAGL FLKFLIPGLF GYGFLQNAMR FLRAHSILDP ILLFSMASLV IHIAIIAYAL VHWTGLGFKG ASLATSISIW IQLIIFGLFM FFSKHIKWDY
201: AFSFEPFHFH HILTNLKLAM PSAAMICLEY CAFEILVLFA GLMPNPETSI SIIAMSVNTH AIAHMLFSGM SVGVSTRVAK ELRSGNPEGA KHVVAVAFKQ
301: TIVLVYVLCL ALLNHHIAWA GLFSDSAEII NKFASMVPLL LISFVLEFTQ GNLSGVVRGC GWERYAMCID LAAFYFIGIP IAVLVVFKLS LHAQVLWIGL
401: ICGLACQTSG LSLLVLLTRS WKKLEGSTNS NRESELSA
Best Arabidopsis Sequence Match ( AT3G23550.1 )
(BLAST)
001: MADPTSKDDH DGEGGRDKSS TFVQKLIDVE EAKTQIIYSL PMIFTNLFYY CIPLTSVMFA SQLGQLELAG ATLANSWATV TGFAFMTGLS GALETLCGQG
101: FGAKSYRMLG IHLQSSCIVS LVFTILITIL WFFTESVFLL LRQDPSISKQ AALYMKYLAP GLLAYGFLQN ILRFCQTQCI VTPLVLFSFL PLVINIGTTY
201: ALVHLAGLGF IGAPIATSIS LWIAFVSLGF YVICSDKFKE TWTGFSMESF HHVVLNLTLS IPSAAMVCLE YWAFEILVFL AGLMRNPEIT TSLVAICVNT
301: ESISYMLTCG LSAATSTRVS NELGAGNVKG AKKATSVSVK LSLVLALGVV IAILVGHDAW VGLFSNSHVI KEGFASLRFF LAASITLDSI QGVLSGVARG
401: CGWQRLATVI NLGTFYLIGM PISVLCGFKL KLHAKGLWIG LICGMFCQSA SLLLMTIFRK WTKLTAATV
Arabidopsis Description
DTX18Protein DETOXIFICATION 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH3]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.