CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95122	Canola	cytosol, plasma membrane, vacuole	5.56	2.61
CDY70305	Canola	plasma membrane	3.47	2.03
CDY06279	Canola	plasma membrane	4.86	1.87
CDY22720	Canola	peroxisome, plasma membrane	7.64	1.09
CDX94924	Canola	plasma membrane	4.17	0.72
CDY32902	Canola	plasma membrane	5.56	0.71
CDY09907	Canola	plasma membrane	4.86	0.69
CDY06268	Canola	plasma membrane	4.86	0.69
CDY35928	Canola	plasma membrane	4.86	0.67
CDY28053	Canola	plasma membrane	4.86	0.64
CDY51719	Canola	plasma membrane	4.17	0.57
CDY07153	Canola	plasma membrane	4.17	0.57
CDY20693	Canola	cytosol	4.17	0.56
CDY22604	Canola	plasma membrane	3.47	0.5
CDY19574	Canola	plasma membrane	2.08	0.5
CDX93457	Canola	cytosol, nucleus, plasma membrane	4.17	0.5
CDX93910	Canola	plasma membrane	3.47	0.48
CDY38264	Canola	plasma membrane	3.47	0.47
CDY53981	Canola	cytosol	2.78	0.35
CDY14779	Canola	plasma membrane	2.08	0.3
CDY06114	Canola	plasma membrane	2.08	0.29
CDX67686	Canola	cytosol, peroxisome, plasma membrane, plastid	2.08	0.29
CDX72049	Canola	plasma membrane	2.08	0.29
CDY33829	Canola	plasma membrane	2.08	0.29
CDY06915	Canola	plasma membrane	2.08	0.29
CDX82212	Canola	plasma membrane	2.08	0.28
CDY32412	Canola	plasma membrane	2.08	0.28
CDY50072	Canola	plasma membrane	2.08	0.27
CDY11764	Canola	plasma membrane	1.39	0.2
CDX90109	Canola	plasma membrane	1.39	0.2
CDX68595	Canola	plasma membrane	1.39	0.19
CDY43534	Canola	cytosol	1.39	0.19
CDY30184	Canola	plasma membrane	1.39	0.19
CDY46716	Canola	cytosol	1.39	0.19
CDY37311	Canola	plasma membrane	1.39	0.18
CDY27537	Canola	plasma membrane	1.39	0.18
CDY19575	Canola	plasma membrane	1.39	0.18
CDY38720	Canola	plasma membrane	0.69	0.1
CDX72644	Canola	plasma membrane	0.69	0.1
CDX76883	Canola	plasma membrane	0.69	0.1
CDY29571	Canola	plasma membrane	0.69	0.1
CDY49443	Canola	plasma membrane	0.69	0.1
CDY10680	Canola	plasma membrane	0.69	0.1
CDY40822	Canola	plasma membrane	0.69	0.1
CDY22420	Canola	plasma membrane	0.69	0.1
CDY34219	Canola	plasma membrane	0.69	0.1
CDY44033	Canola	plasma membrane	0.69	0.1
CDY10319	Canola	plasma membrane	0.69	0.1
CDX94389	Canola	plasma membrane	0.0	0.0
CDY61305	Canola	cytosol	0.0	0.0
CDY65295	Canola	cytosol	0.0	0.0
CDY65296	Canola	cytosol	0.0	0.0
CDY68458	Canola	cytosol, peroxisome, plasma membrane	0.0	0.0
CDX94386	Canola	cytosol	0.0	0.0
CDY53835	Canola	nucleus, plasma membrane, plastid	0.0	0.0
CDY38719	Canola	plasma membrane	0.0	0.0
CDX89375	Canola	plasma membrane	0.0	0.0
CDX89371	Canola	plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.20.1280.190	MapMan:17.7.1.1.25	GO:A0A078E0J0	EnsemblPlants:CDX95120	ProteinID:CDX95120	ProteinID:CDX95120.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005761	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00100661001	InterPro:IPR038340
InterPro:MRP-L47_sf	PFAM:PF06984	PANTHER:PTHR21183	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	InterPro:Ribosomal_L47_mit
SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI0004EE478A	SEG:seg	:	:

Description

BnaC05g05510D

Coordinates

chrLK031886:-:1262477..1263719

Molecular Weight (calculated)

16957.8 Da

IEP (calculated)

10.739

GRAVY (calculated)

-0.578

Length

144 amino acids

Sequence
(BLAST)

001: MFLTRFIGRR FLAVAASTRS ESTTAAAAST VKIAKNPLEE FFEFDRSQDE DKPVVYGRGW KASELRLKSW DDLQKLWYVL LKEKNMLMTQ RQMLQAQNMM
101: FPNPERIPKV RRSMCRIKHV LTERAIEEPD PRRSAEMKRM VNAM

Best Arabidopsis Sequence Match ( AT1G07830.1 )
(BLAST)

001: MFLTRFVGRR FLAAASARSE STTAAAAAST IRTPTNPLEE FFEFDRSQDE DKPVVYGRGW KASELRLKSW DDLQKLWYVL LKEKNMLMTQ RQMLQAQNMQ
101: FPNPERIPKV RRSMCRIKHV LTERAIEEPD SRRSAEMKRM VNGM

Arabidopsis Description

At1g07830/F24B9_7 [Source:UniProtKB/TrEMBL;Acc:Q94JQ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.